Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1577 ATGCAACTCTCAACGGCTATGCTCAAGACTTGCAGGCCTTTCTTCATCACCTTAACTTCAACAACACTATACATTGGTCATTCCATGTCTGCTATGATTGGAAGCTTGGCTGCAACGAAGAATCCAGAGCTCTTTCAACATCTAATCCTGCTTTGTGGTTCTCCAAGAAGAAAAACCAAAGCTTCATCTTCGCCGTATTATAAGCGAGTCTTGCCGATTTTTCTCCAATCAAGGCGTGGGTTTAACTGCAAAATGAGGGGCCGAAGCTACAGTTACAGTCCCTCACCTCCTAGGGGTTATAGCAGAAGACATCGCAGTCCTAGTCCTCGTGGTCGTTACAGTGGTCGTTATGGAGGCCGTGGTAGGGATTTGCCAACTAGTCTTCTGGTTAGGAACCTTCACAAAGATTGCAGGGTGGAAGATCTACGAGGACCTTTTGGCCATTTTGGTCCTCTCAAGGACATTTACCTACCGCGAGATTATTATACCGGGGAGCCACGTGGATTTGGATTTGTCCAATATGTGGATCCAGCTGATGCTGCAGATGCTAAATATCACATGGACGGTCAAATTCTACTTGGTCGTGAGTTGACGGTGGTGTTTGCTGAGGAAAACAGAAAGAAGCCTGCTGAAATGAGAGCGAGAGAGCGATATAGGAGCCGATCATATAGCAGGAGGTCTCCACATCACTATTCTTACTCACCACGCTATGCTCGCACCTATTCTCGCAGTCCGCAGTATATACCTTCTCCAAGACGAAGCCATTATTCCAGGTCAATATCACCAAGGGACCGGAGGTATAGGGAGCGATCATACTCCAGATCACCATATAGGGAGCGATCATACTCCAGATCACCTTATAGGGAGCGATCATACTCCAGATCACCTTATAGGGAGCGATCATATTCAAGAAGCCCTAGTCGAAGTTTATACTAG 936 0.4669 MQLSTAMLKTCRPFFITLTSTTLYIGHSMSAMIGSLAATKNPELFQHLILLCGSPRRKTKASSSPYYKRVLPIFLQSRRGFNCKMRGRSYSYSPSPPRGYSRRHRSPSPRGRYSGRYGGRGRDLPTSLLVRNLHKDCRVEDLRGPFGHFGPLKDIYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERYRSRSYSRRSPHHYSYSPRYARTYSRSPQYIPSPRRSHYSRSISPRDRRYRERSYSRSPYRERSYSRSPYRERSYSRSPYRERSYSRSPSRSLY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1577 311 MobiDBLite consensus disorder prediction 208 311 - -
Lele13g1577 311 Gene3D - 122 236 IPR012677 -
Lele13g1577 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
Lele13g1577 311 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 126 309 - -
Lele13g1577 311 MobiDBLite consensus disorder prediction 257 297 - -
Lele13g1577 311 MobiDBLite consensus disorder prediction 237 256 - -
Lele13g1577 311 SUPERFAMILY RNA-binding domain, RBD 126 230 IPR035979 GO:0003676
Lele13g1577 311 MobiDBLite consensus disorder prediction 86 120 - -
Lele13g1577 311 Gene3D alpha/beta hydrolase 17 110 IPR029058 -
Lele13g1577 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 197 IPR000504 GO:0003723
Lele13g1577 311 SUPERFAMILY alpha/beta-Hydrolases 24 124 IPR029058 -
Lele13g1577 311 SMART rrm1_1 127 200 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1577 Lele-ChrLele13 24831150 24835700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1577 126 235 Eukaryotic Initiation Factors Gene Family AT2G36660 29.091 1.10e-07 51.2