Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1575 ATGGCGGATCCGCCTGGCATCCGCCTCTGCACTTGCGGTATTTCTGAAGCTAACAGAGTCGCTGGCTGTGAGCTCACGCCGTACTTGCTCATACAGCGACAAAATAAGCTTCTTGTTACCCACGATAATGTCCCTGAGACGGCCCCTTTAGATGGCCATTTCTTGCGGTATAGGTGGACCGTTATCGTATGTTTGCAATATGGTATCTTATTGTTGTTTGTCAAGGCATTTAACACGTGTGTGCGGTATTTATGTCGATTCTCTGTTGATTATGTAAATTCTTCAATTGAATACCTCCGTGGGATTTTGGCTCCCAGGATTTTCTATTTGATTATGCTTAGGCCTAAACAGTCTGTGAACTTGCCCCCTTTTCTTTTTACGTCATGCCTGTCTGTCAACATGAGTGTAAAGCAATTAGCAAAATATGGCCAGGGAATTTTGTTTACACTCAAATCACTTGCATATCTTTTTCTTAAGATTCTTTTTGTTAAAATTTTGGCTGATGTTTTATCACTTGGCTTGGGCCAATATGGGATAAGGCTTGTTGTTGTTGTTGTTGTTTTATCACTTGGCTCTTATTTATGCAGGTATCGTGTACAAAGTGATAAAAAGGTTACTGTCTGTAGCATACATCCGTCTGAACAGGCCACGTTGCAGTGCCTTGGCTGTCTTAAGGCCAAAATACCTGTTACCAAAAGTTATCATTGCACACCAAAGTGTTTTTCAGATGCATGGCAACATCATCGTCTTTTACATGATCGTGCTGCAAGTGCGGTCAATGAAAATGGAACTGAAGAGGAGGAATTATTTGGACGTTACAATAGCACTGGGTCTGGGGCAGTTAATAACAGTTTATCTGGCTCTGCTTCAAGCGCTAGCTTGGCAAATGTGTCAGCTCCTCTGTATCCAACTGCTGTTACACAACGAAGTGGTGGAGAAACTTGGATTGAAGTTGGACGATCTAAAACGTATTCCCCAACAGCTGATGATGTTGGTCATGTCCTTATATTTGAGTGTGTTGTAGTTGATGCAGACGCAAAAGTTCCTGTAGGGCATGTTAGTACTATACTAACTTCTCGTGTTATTCCTGCTCCATCTGCTATTCCACGCTGTTTGATTCCTGTTGATGGGATGGCACATATAGATGTAGATGCACGCATAACATCTTCAGGAACATTCACTGTTCTATCTTACAACATTTTGTCTGATGCTAATTCTTCAAATGAATTATATAGTTACTGTCCTCCATGGGCTCTTTCTTGGCCTTACCGCAGGCAAAATTTGTTAAGAGAAATGGTTGGTTATCGGGCAGATATTATTTGTCTTCAGGAGGTACAAAGTGATCATTATGAGGATTTTTTTGCTCCTGAACTGGACAAACATGGTTATTATGGTCTATACAAGAGAAAAACCAATGAGGTATTTGGCAGCAACACCAACACAGTCGATGGTTGTGCAACCTTTTTCCGCAGAGACAGATTTACGCATGTGAAGAAATACGAGGTTGAATTTAACAAGGCTGCGCAGTCTTTAACAGATGCTATGATTCCAACTGGCCAGAAGAAAGCTGCGTTAAATCGGCTGGTTAAGGACAACGTTGCACTAATTGTGGTTCTAGAAGCAAAAGTTAACAATCAGCTAGTTGACACTCCTGGAAAAAGGCAGCTTCTTTGTGTGGCAAATACACATGTAAATGTACACCAAGATTTAAAAGATGTTAAACTCTGGCAGGTGCACACTCTCTTAAAAGGGTTGGAGAAAATTGCTGCAAGTGCAGACATTCCAATGTTAGTTTGTGGAGATTTTAATTCGGTTCCTGGAAGTGCTCCACATTCACTTCTTGCATTGGGGAAGGTAGATCAAACACATCCAGATTTAGCAGTTGATCCACTTAATATACTGCGGCCACACAACAAGTTGGTTCATCAATTGCCACTGGTTAGTGCATACTCGTCCTTTGGAAGAACCGTAGGCCTTGGATTTGAGCAGCACAGAAGGAGAGTGGATACTGCAACAAATGAACCCTTGTTCACAAATGTCACCAGGGATTTTATTGGCACTCTAGATTACATATTCTACACAGCGGATTCATTGGTGGTGGAGTCACTATTGGAGCTATTGGATGAGGAGAGTTTGAGGAAAGACACAGCACTCCCCTCTCCTGAATGGTCATCTGATCATATAGCTCTGCTTCGCAAAAGCAAATCTACAGGGCCGATTGGATTTTTCTGGAATCTCCATTATGCTCTGGCTTCAGATCTAAATACACAAAGAAAGGCCGAAAGAAGCATTTGGTTGATAAGCACCTGTAAGAATGCAGAAAGAAGATTCCCTCCGACGGTATGGGAAGGGCCGCCTAACCTAGAGAAGGACGCCGGAAAATTTTCATCTAGGGTTTGCCCTTATCCGGATATTGCTCCCACGGTCCTGATTGAGCAAAGTAGCAAGATGGGTGTGAATTCCCTGTCATCGGAGTCGAGTAACGATCTCGACGAGCAGATCTCGCAGCTAATGCAGTGCAAACCGCTTTCAGAGCAACAGGTTAGAGTTTTATGCGAGAAGGCAAAGGAGATTTTGATGGATGAAAGTAATGTTCAGCCTGTGAAAAGTCCTGTGACTATCTGTGGTGATATTCATGGACAGTTTCATGATCTAGCTGAGCTATTTCGAATTGGAGGAAAGTGTCCAGATACAAACTACTTGTTTATGGGAGATTACGTTGACCGAGGTTATTATTCAGTTGAAACTGTAACACTCCTTGTGTCATTGAAAGTGCGGTATCCTCAACGGATTACTATTCTTCGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTTTATGGATTTTATGATGAATGCCTAAGAAAGTACGGTAATGCCAATGTTTGGAAGATCTTTACGGACCTTTTTGATTACTTTCCATTGACTGCATTGGTTGAATCAGAAATATTTTGTTTGCATGGTGGACTGTCGCCATCAATTGAAACCCTTGATAATATACGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTGTTATGGTCCGATCCTGATGACAGATGTGGCTGGGGGATTTCTCCTCGTGGTGCTGGATATACCTTTGGCCAGGATATATCTGAGCAATTCAATCACACAAACAGTCTTAAGTTGATCGCCAGAGCTCACCAGCTAGTGATGGATGGATTTAACTGGGCTCATGAACAGAAAGTGGTTACCATATTTAGTGCACCTAACTACTGTTATAGATGTGGGAACATGGCTTCCATTTTGGAGGTTGATGATTGCAAGAGCCACACATTTATTCAGTTTGAACCGGCTCCTAGGAGAGGTGAACCGGATGTCACTCGTAGGACACCTGATTACTTCCTATAA 3390 0.4239 MADPPGIRLCTCGISEANRVAGCELTPYLLIQRQNKLLVTHDNVPETAPLDGHFLRYRWTVIVCLQYGILLLFVKAFNTCVRYLCRFSVDYVNSSIEYLRGILAPRIFYLIMLRPKQSVNLPPFLFTSCLSVNMSVKQLAKYGQGILFTLKSLAYLFLKILFVKILADVLSLGLGQYGIRLVVVVVVLSLGSYLCRYRVQSDKKVTVCSIHPSEQATLQCLGCLKAKIPVTKSYHCTPKCFSDAWQHHRLLHDRAASAVNENGTEEEELFGRYNSTGSGAVNNSLSGSASSASLANVSAPLYPTAVTQRSGGETWIEVGRSKTYSPTADDVGHVLIFECVVVDADAKVPVGHVSTILTSRVIPAPSAIPRCLIPVDGMAHIDVDARITSSGTFTVLSYNILSDANSSNELYSYCPPWALSWPYRRQNLLREMVGYRADIICLQEVQSDHYEDFFAPELDKHGYYGLYKRKTNEVFGSNTNTVDGCATFFRRDRFTHVKKYEVEFNKAAQSLTDAMIPTGQKKAALNRLVKDNVALIVVLEAKVNNQLVDTPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLALGKVDQTHPDLAVDPLNILRPHNKLVHQLPLVSAYSSFGRTVGLGFEQHRRRVDTATNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLRKSKSTGPIGFFWNLHYALASDLNTQRKAERSIWLISTCKNAERRFPPTVWEGPPNLEKDAGKFSSRVCPYPDIAPTVLIEQSSKMGVNSLSSESSNDLDEQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKSHTFIQFEPAPRRGEPDVTRRTPDYFL 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1575 1129 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 828 1129 - -
Lele13g1575 1129 Gene3D - 822 1129 IPR029052 -
Lele13g1575 1129 SUPERFAMILY DNase I-like 388 730 IPR036691 -
Lele13g1575 1129 Pfam Endonuclease/Exonuclease/phosphatase family 396 727 IPR005135 GO:0003824
Lele13g1575 1129 CDD Deadenylase_CCR4 395 731 - -
Lele13g1575 1129 FunFam Serine/threonine-protein phosphatase 822 1129 - -
Lele13g1575 1129 CDD MPP_PP2A_PP4_PP6 829 1113 - -
Lele13g1575 1129 SUPERFAMILY Metallo-dependent phosphatases 826 1114 IPR029052 -
Lele13g1575 1129 Gene3D Endonuclease/exonuclease/phosphatase 375 737 IPR036691 -
Lele13g1575 1129 FunFam Carbon catabolite repressor protein 4 1 362 738 - -
Lele13g1575 1129 PRINTS Serine/threonine phosphatase family signature 871 898 IPR006186 GO:0016787
Lele13g1575 1129 PRINTS Serine/threonine phosphatase family signature 1075 1091 IPR006186 GO:0016787
Lele13g1575 1129 PRINTS Serine/threonine phosphatase family signature 900 927 IPR006186 GO:0016787
Lele13g1575 1129 PRINTS Serine/threonine phosphatase family signature 968 994 IPR006186 GO:0016787
Lele13g1575 1129 PRINTS Serine/threonine phosphatase family signature 933 957 IPR006186 GO:0016787
Lele13g1575 1129 PRINTS Serine/threonine phosphatase family signature 997 1024 IPR006186 GO:0016787
Lele13g1575 1129 PRINTS Serine/threonine phosphatase family signature 1053 1073 IPR006186 GO:0016787
Lele13g1575 1129 Pfam Calcineurin-like phosphoesterase 871 1062 IPR004843 GO:0016787
Lele13g1575 1129 ProSitePatterns Serine/threonine specific protein phosphatases signature. 934 939 IPR006186 GO:0016787
Lele13g1575 1129 SMART pp2a_7 843 1113 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1575 Lele-ChrLele13 24806679 24819472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1575 835 1059 Calmodulin-binding Proteins AT5G63870 34.831 4.25e-31 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0822 06 5082805 5083793 Lele13g1575 13 24806679 24819472 CCT
Lele07g0996 07 5998847 6000685 Lele13g1575 13 24806679 24819472 CCT
Lele08g0810 08 5093420 5094700 Lele13g1575 13 24806679 24819472 CCT
Lele05g0954 05 5910894 5915187 Lele13g1575 13 24806679 24819472 CCT
Lele13g1575 13 24806679 24819472 Lele15g0848 15 4925097 4930592 hybridization
Lele13g1575 13 24806679 24819472 Lele16g0868 16 4892466 4897276 hybridization