Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1571 ATGGACAAAGCTTCAGAGGCTAGCAGTAGAGAGACCCATGACTTCATGAACGTCGATTCCTTCTCTCAGCTACCCTTCATCCGGCGCCCTGCCCCTCTTAAAGAAAAGCCCATCAAGCTCTTCGGCATAGAATTCGGTTCCCCTGAAGCAACCGCCACCGGCCCCCCGGTGGACGATTTCGAATCCGTCGAAGATTCGAATGGGAAGGACAACACGGCCACCACCGAGAACAGCGAGACTAACCGGAGATTCGAATGCCATTACTGCTGTAGAAACTTCCCAACTTCCCAAGCCTTAGGTGGCCACCAAAACGCTCACAAACGAGAGCGCCAACACGCCAAACGAGCGCACCTTCACATGTCTGAGCCTCAAGTTTACAGCCTTGTGAACTACAGATCATTCACTTCACCAACTTCAACGTTAACCACGCCAATGCCTGCTTCTACTTATCCAACTTCTGCTAGGTTTTATGGAAGCCCATATTCTCATCATCGGCATCCCATCAATGGAAGCACCTTGGGCATGTGGCGAATCCCCACCCTCCAAACTAACCCTACTTTCAATCTTGACCGTTCGTTGAATCCATTGCCATCGTTTGCCGGCGAGGATATCAACATGAGGGCCTTATCTCTGCAGCTTGGCGGGTCTGCTTCACAGCTGCAAAACCGGTACGTCGTCCATGACTCCAAACCCGGCGTTCAAGACCATGTCAGTTTGGATCTTCATCTGTAA 732 0.5137 MDKASEASSRETHDFMNVDSFSQLPFIRRPAPLKEKPIKLFGIEFGSPEATATGPPVDDFESVEDSNGKDNTATTENSETNRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLHMSEPQVYSLVNYRSFTSPTSTLTTPMPASTYPTSARFYGSPYSHHRHPINGSTLGMWRIPTLQTNPTFNLDRSLNPLPSFAGEDINMRALSLQLGGSASQLQNRYVVHDSKPGVQDHVSLDLHL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1571 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Lele13g1571 243 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Lele13g1571 243 Pfam C2H2-type zinc finger 83 108 - -
Lele13g1571 243 MobiDBLite consensus disorder prediction 47 78 - -
Lele13g1571 243 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Lele13g1571 243 PANTHER ZINC FINGER PROTEIN GIS 1 243 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1571 Lele-ChrLele13 24773739 24774470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1571 1 243 C2H2 Transcription Factor Family AT3G58070 40.741 5.63e-48 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0951 05 5885509 5886288 Lele13g1571 13 24773739 24774470 CCT
Lele13g1571 13 24773739 24774470 Lele15g0852 15 4951214 4951945 hybridization
Lele13g1571 13 24773739 24774470 Lele16g0871 16 4909558 4910316 hybridization