Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1562 ATGGAGCTGGCTTTGAGCTTGGGAGACGCACCAAAGGGCTTCCCTATACTGGACAAGGCCCCAAGAATGCCTAACAAGGAAGCTGATTTCTGCATGGCACTCGGCCAAGGTCTCTCTGTGAAAGCTTCCGATCAGAATAGGGCCAGTCCCACACAGGTAGTAGACGAGACCAGAGCGTCTTCAGATCCGCCTCTTCAGTTAGACCTTCTTCCCTTCACGCCTGTTCCTCGACCCCACCCAGCTTCCCATCTTCGGATTCCTTGGCTCTCCGATTCTTTGGGATCTCAACGTTTCTCGCCGGATGGAGGAGCCAAGGGGTTGGACGTCAACCGTTTGCCGGCGGCAGGAGTGGAGGAGGAGGACGATGGTACTCCTCTGTCGTCGTCTCCTAACAGTGTGTCATCATTTCACATGGACTTCTACATGAGGCGTGGTAACGCGGGCACTAAAAGCAAGAGGGAGCTTGAGGGTGAAGGTGAAAGAGCTAGTTCTAGGGCCAGTGACGATGATGAAAACGGGTCGACTCGCAAGAAACTCAGGCTATCCAAGGAACAATCAGCTTTTCTTGATGAAAGCTTCAAAGAACACACTACTCTTAATCCCAAGCAGAAACTGATTCTGGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTAGATTGTGAGTATCTGAAGAGATGCTGCGAGACGCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTGAGGGCATTAAAGACGTCTCTGCCATTTTTCATGCAGCTTCCAGCTACCACTCTGACAATGTGCCCCTCCTGCGAAAGGGTGGCCACGAACTCATCATCGTCTGCCTCCGCATTAACCACCGTCACGGCCCCCAACAACGCTTCTCAGGCATCCCCACTCATGTCTCTCACCAACCCCAGAACGGTCCAGCCTCATCGCACTCCTTCGTCGTGA 999 0.5205 MELALSLGDAPKGFPILDKAPRMPNKEADFCMALGQGLSVKASDQNRASPTQVVDETRASSDPPLQLDLLPFTPVPRPHPASHLRIPWLSDSLGSQRFSPDGGAKGLDVNRLPAAGVEEEDDGTPLSSSPNSVSSFHMDFYMRRGNAGTKSKRELEGEGERASSRASDDDENGSTRKKLRLSKEQSAFLDESFKEHTTLNPKQKLILAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSLPFFMQLPATTLTMCPSCERVATNSSSSASALTTVTAPNNASQASPLMSLTNPRTVQPHRTPSS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1562 332 SMART HOX_1 174 236 IPR001356 GO:0003677
Lele13g1562 332 MobiDBLite consensus disorder prediction 306 332 - -
Lele13g1562 332 MobiDBLite consensus disorder prediction 116 135 - -
Lele13g1562 332 MobiDBLite consensus disorder prediction 41 67 - -
Lele13g1562 332 Pfam Homeobox associated leucine zipper 232 266 IPR003106 GO:0006355|GO:0043565
Lele13g1562 332 ProSitePatterns 'Homeobox' domain signature. 207 230 IPR017970 GO:0000981|GO:0006355
Lele13g1562 332 Coils Coil 238 268 - -
Lele13g1562 332 MobiDBLite consensus disorder prediction 145 179 - -
Lele13g1562 332 CDD homeodomain 176 233 IPR001356 GO:0003677
Lele13g1562 332 CDD bZIP 225 264 - -
Lele13g1562 332 Pfam Homeodomain 176 230 IPR001356 GO:0003677
Lele13g1562 332 ProSiteProfiles 'Homeobox' domain profile. 172 232 IPR001356 GO:0003677
Lele13g1562 332 SMART halz 232 275 IPR003106 GO:0006355|GO:0043565
Lele13g1562 332 MobiDBLite consensus disorder prediction 146 179 - -
Lele13g1562 332 MobiDBLite consensus disorder prediction 41 59 - -
Lele13g1562 332 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 37 307 - -
Lele13g1562 332 Gene3D - 180 230 - -
Lele13g1562 332 FunFam Homeobox-leucine zipper protein HAT22 180 226 - -
Lele13g1562 332 SUPERFAMILY Homeodomain-like 166 233 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1562 Lele-ChrLele13 24728377 24729677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1562 64 296 Homeobox Transcription Factor Family AT5G47370 53.785 6.98e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele13g1562 HD-ZIP_N 0.00022 No_clan