Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1561 ATGAACCTCGATTTGAATTTGGGTCCCATTCCGGAGCCACCGGCCGATTCCATAGCCAGCGAACGTGCGGTCTCAGCGGATGACTGGACCGAGCAACCTCTTCGCCGAGCCAGTGACGCTCGTCGGTATAGGTCTCGACTACAGTGGAGATCGCATAATCTTCTTATCCCACCCGATGCCCAGCGGCATGTTAACCCGCCGCCTGAATCCCAAAATATTCCGATGGAATTAAATCAATTTGTGGAGACCCCTGCCATTGAGACTGCTCTGCAGGATGATCGGGACAGTGTTGAAGCTGACCTAAGATCAGGGGAGGTACAAAAAGCATGGGAAAACAACAACAGCTTAACTGGGGATGAGGAATCAGAGAAGAAGGATGATGTTGAAAAGGGTATTGGCAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCCAAGGATCCTGTTGTGACTTGCTGTGGCCATTTGTTTTGTTGGCCTTGCCTCTATCGATGGCTACATATGCATTCAGAAGCCAAGGAATGTCCTGTTTGTAAGGGTGAGGTGTCGTATAAAAATGTTACCCCAATATATGGTCGTGGAAACAACAATGTTCAAGATCCTGAGGAAGATCCCACTCTTAAAATCCCTCTCAGGCCCCATGGAAGGCGTGTTGAGAGTTTAAGACCAACCTTTCAGAGAAGTGCATCTGGAGACCCCATGGAGCAGATGATTAGGCGTCTCGGAGGAAGAGTTGATCTTGCTCGGGGTCTGGTTCGCCCGCATGGTCCTGAAACAGCAGAGAGAACAAGCTTCTTGCTGAACAGGTTTTTGACTTCTCGAGCAATTCGGAGAGAGCAAAATCTCGAGGCGTCCCCAGATGATGCAGGATATCTAACGGGGAACAGTATGGGTAATCTTGACGCAGGGGATAATGGCAGGCTGCAATCTCTTCTGCTTCGAAGAACACAGTCACACAGGGCAACACTTTCATCTTTTTCCTCAGCTTTAAGCTCTGCAGAGCGAGTGGTTGAGACATATTTCCGGACCCGTGCGGGAGGTAGAAACCAAGAACAAGCTCCACCGGTGGACGATAGAGATTCATACTCAAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCCGTGGAAATTGATTCCATGGTATCCTTGTCCACGTCCTCTTCTAGAAGGAGGAACGATTTTCCTAGAGTTTCTGATGTAGATACTGGAGACTCTCGTGCTCCTAGGCCTAGGCGAAGACGTTTAAATTGA 1272 0.4858 MNLDLNLGPIPEPPADSIASERAVSADDWTEQPLRRASDARRYRSRLQWRSHNLLIPPDAQRHVNPPPESQNIPMELNQFVETPAIETALQDDRDSVEADLRSGEVQKAWENNNSLTGDEESEKKDDVEKGIGNDGSFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWLHMHSEAKECPVCKGEVSYKNVTPIYGRGNNNVQDPEEDPTLKIPLRPHGRRVESLRPTFQRSASGDPMEQMIRRLGGRVDLARGLVRPHGPETAERTSFLLNRFLTSRAIRREQNLEASPDDAGYLTGNSMGNLDAGDNGRLQSLLLRRTQSHRATLSSFSSALSSAERVVETYFRTRAGGRNQEQAPPVDDRDSYSSIAAVINSESQVDTAVEIDSMVSLSTSSSRRRNDFPRVSDVDTGDSRAPRPRRRRLN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1561 423 MobiDBLite consensus disorder prediction 1 40 - -
Lele13g1561 423 MobiDBLite consensus disorder prediction 103 128 - -
Lele13g1561 423 CDD RING-HC_AtRMA_like 139 183 - -
Lele13g1561 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 202 IPR013083 -
Lele13g1561 423 SMART ring_2 141 181 IPR001841 -
Lele13g1561 423 FunFam Zinc finger family protein 122 195 - -
Lele13g1561 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 113 296 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele13g1561 423 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 - -
Lele13g1561 423 MobiDBLite consensus disorder prediction 389 423 - -
Lele13g1561 423 MobiDBLite consensus disorder prediction 399 417 - -
Lele13g1561 423 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Lele13g1561 423 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Lele13g1561 423 SUPERFAMILY RING/U-box 137 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1561 Lele-ChrLele13 24717123 24718394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1561 1 412 C3H Transcription Factor Family AT3G58030 50.575 4.38e-116 344