Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1555 ATGTCTATTGCGAATTCATTAGCGGTAAAGGCTACAAATGGCGATCCTTTTCGCAGCACCGCAGAGCCACTCTGCATGACTGCATCTGGATTTCGATTTACCTACGCATTTGAGCATGCTGAGGATATTCAGCCTCTTGTTTGTGACAATGGAACGGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGCATTGTGGGTCGCCCTCGCCACACAGGTGTGATGGTTGGTATGGGACAGAAGGATGCGTATGTCGGGGATGAAGCTCAATCAAAGAGAGGTATTCTGACTCTGAAATACCCTATCGAGCATGGAATTGTTAGCAACTGGGACGATATGGAAAAGATCTGGCACCACACTTTCTATAATGAGCTCCGTGTGGCTCCCGAAGAGCATCCAGTTCTCCTGACAGAAGCACCTCTCAACCCCAAGGCTAATCGTGAGAAAATGACTCAGATTATGTTCGAGACCTTTAACACTCCAGCCATGTACGTCGCTATCCAGGCCGTGCTTTCCCTTTACGCTAGTGGCCGCACAACTGGTATTGTTCTGGACTCCGGAGATGGTGTTAGCCATACGGTTCCCATCTATGAAGGCTATGCCCTCCCACATGCAATCTTGCGTTTGGATCTTGCTGGGCGTGATCTCACTGATGCCTTGATGAAAATTTTGACTGAGCGTGGATACTCTTTCACCACTAGTGCTGAGCGTGAAATTGTGAGAGACGTGAAGGAAAAATTAGCCTACATTGCGCTTGATTATGAACAAGAGCTGGAAACGTCAAAGACCAGCTCAGCTGTTGAGAAGAGTTATGAGCTCCCTGATGGGCAGGTGATCACAATAGGTGCTGAAAGATTCCGCTGCCCTGAAGTGCTCTTCCAACCATCCATGATTGGGATGGAAGCTGCTGGCATACACGAAACAACATATAACTCAATCATGAAGTGTGACGTTGACATTAGGAAGGATCTCTACGGTAACATCGTCTTGAGTGGTGGTTCCACTATGTTCGCAGGCATTGCTGATAGAATGAGTAAGGAGATCACAGCTTTGGCACCCAGTAGCATGAAAATCAAGGTGGTTGCACCACCAGAGAGGAAGTATAGCGTCTGGATTGGAGGCTCCATTTTGGCATCTCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCTGAGTACGATGAATCCGGGCCATCAATTGTTCACAGGAAGTGCTTCTAA 1242 0.4807 MSIANSLAVKATNGDPFRSTAEPLCMTASGFRFTYAFEHAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFAGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1555 413 Gene3D - 46 407 - -
Lele13g1555 413 PRINTS Actin signature 274 290 IPR004000 -
Lele13g1555 413 PRINTS Actin signature 64 73 IPR004000 -
Lele13g1555 413 PRINTS Actin signature 178 197 IPR004000 -
Lele13g1555 413 PRINTS Actin signature 99 121 IPR004000 -
Lele13g1555 413 PRINTS Actin signature 153 166 IPR004000 -
Lele13g1555 413 PRINTS Actin signature 87 98 IPR004000 -
Lele13g1555 413 Gene3D Actin; Chain A, domain 4 218 309 - -
Lele13g1555 413 SUPERFAMILY Actin-like ATPase domain 42 191 IPR043129 -
Lele13g1555 413 PANTHER ACTIN 45 406 IPR004000 -
Lele13g1555 413 FunFam Actin, alpha skeletal muscle 39 210 - -
Lele13g1555 413 Pfam Actin 41 413 IPR004000 -
Lele13g1555 413 ProSitePatterns Actins and actin-related proteins signature. 142 154 IPR020902 -
Lele13g1555 413 FunFam Actin, muscle 218 309 - -
Lele13g1555 413 Gene3D - 176 376 - -
Lele13g1555 413 SUPERFAMILY Actin-like ATPase domain 185 413 IPR043129 -
Lele13g1555 413 ProSitePatterns Actins signature 2. 394 402 IPR004001 -
Lele13g1555 413 SMART actin_3 43 413 IPR004000 -
Lele13g1555 413 CDD NBD_sugar-kinase_HSP70_actin 46 219 - -
Lele13g1555 413 ProSitePatterns Actins signature 1. 91 101 IPR004001 -
Lele13g1555 413 FunFam Putative actin-related protein 5 377 405 - -
Lele13g1555 413 FunFam Major actin 295 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1555 Lele-ChrLele13 24677425 24679697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1555 40 413 Cytoskeleton Gene Families AT3G12110 97.059 0.0 761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1555 13 24677425 24679697 Lele15g0870 15 5037001 5038996 hybridization
Lele13g1555 13 24677425 24679697 Lele16g0889 16 5016167 5018924 hybridization