Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1551 ATGGATGCCCGCAAGAGGGGTAGGGTTGAAGCTGGAGCCAATGTTAATGGCTGTTCCAAAAAGTCCAAGCAAGCGTATGAACTCACCTTTCAGTTGTTGAGCAACTGTTCCACCGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTACAATGCTGTTGCCCACATGATGAATCTAACGTCGGCTGTGCCTCCAGCATCTAGAAATATGGTTGCCCCACCAACTTTCCCTAACGGGGCTGCATCGCCAACTGTTAAAACCCGCACATGCAACAAGTATAATACTGCTGAAGGCTGCAAGTTTGGTGACAAGTGTCACTTTGCCCATGGTGAATGGGAACTTGGTAAGGCTATTGCTCCGTCGGGGGATGATCATCGTACCATGGGACCTATTCCTGGCCGTTCAGCTGCGCGAGTGGAGCCTCCTCCAGGTCCTGTTGCTAGCTTTGGTGCCAACGCTACTGCTAAGATCAGTGTTGAAGCTTCATTAGCTGGAGCTATCATAGGAAAGGGCGGTGTGAACTCCAAGCAGATCTGCCGCCAAACAGGAGCCAAACTCTCAATTCGGGATCATGAGTCAGATCCAAATCTTAGGAACATCGAACTTGAAGGTAGTTTTGAGCAAATTAAGAATGCGAGCAACATGGTAAAAGAGTTGCTGGTGACATTATCGATGTCGGCGCCTCCTCAATCTCATGGCGTTCCTGGAGCACCACGTTCTCACGGAAGTAACTTGAAGACAAAGCTGTGTGAGAATTTTACCAAAGGATCTTGCACCTTTGGAGAGAGATGTCACTTTGCGCATGGGGCTACTGAATTACGTAAAGCAGGCGTATGA 858 0.4942 MDARKRGRVEAGANVNGCSKKSKQAYELTFQLLSNCSTAGCPFGESCHFLHYVPGGYNAVAHMMNLTSAVPPASRNMVAPPTFPNGAASPTVKTRTCNKYNTAEGCKFGDKCHFAHGEWELGKAIAPSGDDHRTMGPIPGRSAARVEPPPGPVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKNASNMVKELLVTLSMSAPPQSHGVPGAPRSHGSNLKTKLCENFTKGSCTFGERCHFAHGATELRKAGV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1551 285 Gene3D - 251 283 - -
Lele13g1551 285 Gene3D - 86 124 - -
Lele13g1551 285 CDD KH-I 161 224 - -
Lele13g1551 285 Pfam KH domain 162 225 IPR004088 GO:0003723
Lele13g1551 285 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Lele13g1551 285 Pfam RNA-binding, Nab2-type zinc finger 41 51 - -
Lele13g1551 285 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 148 229 IPR036612 GO:0003723
Lele13g1551 285 SMART c3hfinal6 251 277 IPR000571 GO:0046872
Lele13g1551 285 SMART c3hfinal6 32 53 IPR000571 GO:0046872
Lele13g1551 285 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Lele13g1551 285 ProSiteProfiles Type-1 KH domain profile. 159 223 - -
Lele13g1551 285 ProSiteProfiles Zinc finger C3H1-type profile. 251 278 IPR000571 GO:0046872
Lele13g1551 285 PANTHER CCCH ZINC FINGER/TIS11-RELATED 18 143 IPR045877 GO:0003729
Lele13g1551 285 FunFam Zinc finger CCCH domain-containing protein 52 156 253 - -
Lele13g1551 285 Gene3D K Homology domain, type 1 156 250 IPR036612 GO:0003723
Lele13g1551 285 SUPERFAMILY CCCH zinc finger 90 121 IPR036855 GO:0046872
Lele13g1551 285 SMART kh_6 158 228 IPR004087 GO:0003676
Lele13g1551 285 FunFam Zinc finger CCCH domain-containing protein 86 123 - -
Lele13g1551 285 SUPERFAMILY CCCH zinc finger 250 281 IPR036855 GO:0046872
Lele13g1551 285 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 118 IPR000571 GO:0046872
Lele13g1551 285 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 276 IPR000571 GO:0046872
Lele13g1551 285 FunFam Zinc finger CCCH domain-containing protein 246 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1551 Lele-ChrLele13 24654648 24657569 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele13g1551 KH_1 2.1e-12 CL0007