Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1550 ATGGCGTCTAAAGGTCCGAGGTCTAAGATTGATCACGAGAGTAGAGCAAAGCGGCAAAAGGCGCTTGAGGCTCCAAGGGAGCCTCGACGTCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGGTAGATCCAGCTACAAGAGGTGAAAAGAAGATGAAGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTCTGGTTGAGAAACAGTCACCAGAGCATCATAGGAGTGCTCAATATAAGGGAGTAGATGAAGACGTTATCAACAAATCTAATGAAGCTAATGCGGCAGAGTTTCTGTCAGATCCTATTGACAATGATGAAGAATATGACGTGCAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGAGGAAAGGCTGGAGGAGTTGGCAGCTTTGCGTTATGAAGTTGATCTTCCACTTGAGGAGTTACTGAAACGATATTCTGAAGAGAAAGGACCAGTTAGTGAAGAAAGTAGTCCAGAGCACAGCGATGATGATAATAAAGAAGTCAGAGCTGGTGATGGAAGTGAAAACAGAGACAATATTTTATCTGTTAGCAAGCTTGGCTCAAGCAACTCCAGCATGGTCTCTGGTCGTCGTTGTGATGAGAGTAATGGTGGCCTAACTACACCAGCAGATAATATAGCCGAAGATGGGACTTGTCAATCTGAAAATATGGCATATGACTTTAGCGATGAAGAGGAAGATGGTGACTTCTTGCTTGTCACAGAAGATAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGGTGCAATTAATCCCAAGGATGAGGTTAAGAGCTATGGCAAACATAGGGAACATGAATCAGAAGATGCTGCTTCTTTGTCGGAAGATCTTTTGGATTCTTCACTTCATGAAGATGATAGGAAGAAAGATACTGCTGTTTCTGTGGATGAAGATGTCAAGCCTATCGAGCACATGGCTTTTGTACAATCCCAGACTGAAGAACAACATTGTGAAGCACCTCATGAAAATCCGGAGGCAAGGGATAGTGAAAATCTGATAGCAGATGCAGCAGCAGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGCACAAAATTCCCTTTTCTCCTCAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGATTGGCTTGTAACAATGTATGAAAAAAGGCTGAATGGGATTTTGGCAGATGAAATGGGGCTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGCATTTGGGGCTCACATCTCATTGTGGTACCAACTAGTGTCATGCTTAACTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGAGGAAGCTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCCTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAGACCCTCTTGAATTTCAACTCGAAGCGACGCATTCTCTTGACTGGTACACCGTTACAGAATGATCTGATGGAACTTTGGTCTCTCATGCATTTCTTAATGCCTCATGTTTTCCAGTCTCATCAGGAGTTTAAGGATTGGTTCAGTAATCCGATATCTGGGATGGTGGAGGGGGAAGAAAAGGTAAATAAGGAGGTTGTTGATCGGTTGCACAATGTCCTTCGTCCGTTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTACTGAGACCCAAGCCACTCTTGCGAGTGCCAATTTTTTCGGGATGATCAGTATCATAATGCAACTCCGTAAGGTTTGCAATCATCCTGACCTTTTTGAAGGTCGTCCTATTATCAGTTCTTTTGATATGTGGGGCATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGATCTCAACCAGCCCCTTTTCGTGGGTAGACCTTAGAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTATTGAGACCCCTGCAAGTTTAATTATGGAGCGTGCTGATATGAATGGCCTACAAGTAATTAGGCCTAAATCGAAGGATCAGAGAAGTTTTCAAGGAACTAACACTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGCGAAGGAACGGGCAGCAGCTATTGCATGGTGGAATTCCTTGAGGTGTAAAAAAAGGCCTGTCTATTCAACAAACCTACGGGATCTTCTTACCATTAGGCATCCTGTATATGACATTCATCAGGTGAAGGCTAACCCTAGGTCATACATGTATTCCTCAAAGCTAGCTGATATTGTCCTCTCACCAGTTGAACGTTTCCAAAGGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCCCCTCCTGTTTGCTGGTGCAGCAGAAGTGAGACTTCAGTGTTTTGTCATCCATCATACAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTTTGTCGCCAATCAGGCCAGCAATTGTCCGACGGCAGGTGTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGGAAGCTGCAGGAGCTTGCAAGATTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCATTGATATTCACCCAGATGACAAAGATGCTTGATGTACTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACACAACCAGAAGAGAGGCAAACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAACCTAGTGGGAGCTGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATATTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATTTAGTTATACAGAGTGGGGCTTATAATACTGAATTTTTCAAGAAGCTTGATCCTATGGAATTATTTTTGGGTCATAGAACACTTGTAGTGAAAAACATGCAGAAGGAGAAAAGCCAGAACATTGGGGATGAAGTTTCTGTAAGTAATGCAGATTTGGAGGCAGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGAAAACCAGGAGTTCACAGAAGAAGCCATTGGGAGACTTGATGATGATGAGTATGTAAATGAAGATGATACAAAAGTTGATGAGCCTTCAGAATTAGCTGAATCAGTTTCTAAGTCAAGTAAGGAGAATGCATTAATGTTAGTTGGAAGTGATCCTAAGGAAGAAAGACCTCTTTCTGTATCTATCAAAGAAGATGATGTTGACATGCTGGCTGATGTCAAACAGATGGCTGTGGCGGCGGCGGCGGCTGGACAAGCTATCTCAGCCTTCGAGAACCATCTACGCCCAATTGATCGGTATGCCATTCGTTTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATATGAAGTGAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAGAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTCGTATATGAAAGATGGGACACTGATTTTGCTACTGAGGCTTATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCTAAGCGGAAAGAAGAAGCTGACGAAGAAAGTTGTGATCCTGGAATAACTCAAACGCCAAGGGATTCTAAGCCCAGACCTAAAAAGAAACTCAAGAAACCCAAGTTTAAATCCCTGAAGAAAGGATCTTTAGCCTCTGAATCCCCACCTATGAAAGAAGAATCACTAACAGACCCATTGTCAATAGATGATGAGATTGTCACTAGTCTGGACCTGGTGTCGCCAAATTCAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTGTAGCTGACTGTGAAAAGGAGAAGACACTAAAGAAGTCCAAGAGGGCTGCTGATATTTGTGTTTCAGATTCAGATAATGCGTTGTTAGGTTTGCCATATGACCATGCAGAATCAAATCAATGTGAAAGTATGGTTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAAATGGGAGGGAAAATATCCATAACTCTGATGCCAGTCAAACGGATTCTGACAATAAAACCAGAAAAAGTGAAGAAGGGTAATTCTTGGTCAAAAGATGGGATTCCATCAGCTGATTTTTGGCTGCCACAGGAAGATGCAATTTTATGTGCAGTTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACACTCTATGGTATGACTGCTGGAGGATCGTACAGGGGCAGATACCGCCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTAGTCCAAAAATATGTTTTGTCAACAGCAGACAATGCTAATCATGAGAGGGGCAACAGTGCTGCTTCTGGAAAGTCTCTGCTGAAAGTTACGGAGGATAACGTTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGAAAATAGAGAGTTATTGCTGCAGAAGCATTTTTTTGCTCTGCTTTCTTCTGTCTGGAAGGCTGCATCACGTGTTGACCAAAGGCAAAATCCGCCACCAGCACAAAATGGTCACTATTTTGATCATAGTTTCTTTACTTCCATGGGCCATAATTCTCAGAGCCTTCTGAAGAAGCCTTCTGAAAGGATGGCTGTCACTAATCTGGCCCAGAGCAGAAAGTTATTAGCTGCTGCACTTGATGAAACCAGCAGTAGGCAACAGGATGATAAAATCTCTCTCTCAAATCAGGGTGATGATGTGCCTGTGACTACCGATCAGCTGGACTTGACACTGGAATTCCCGAAAGACGATAGTGACACCTTAATCTCATTTCCTTCTGTTATAAATTTATCCATACAAGGGACAGAGCCCCTACCATCGTTAATTTACCCAAATGGGGAAGATCATCATCTTAGGGCTTGTGGATCTGTTGCTGAGGATCGGTTCAGGGAGGCTGCCAGAGCTTGCGAGGAAGATAGTTGTCGATGGGCGTCATCAGTATTCCCAACAAATGATTCAAGATCCAGACCAGGATCCAAGATGCAAGCTTCAGGAAAGCACAGGTCTTCCATCTCAGACTCCATTAAGCCTTCTAAGTCGAAGTCAAAACGAAATTCAATGGATACTAGTGAGATGCGTCACCAACGGGTTGAGCCATTATTCCAGTCATTGCCATCACTTCAACCTAAGGATCTGAGAATCGATCTTAATTCATTAGCAATGGATGAAACGGTGACTGATGATATGGATTGCAATCTGCCCTTTGTCCCAAATGAGGAAAATTTGTTGGATCCTTTAGGCATGGTCCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTTGATGATTGTTCAGAATTGCCAGAATATACTGAAATTGGATAA 5910 0.4205 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQAKKVALRASKGMVDPATRGEKKMKVLYKHQMELDEKKKKALDKQLEFLLVEKQSPEHHRSAQYKGVDEDVINKSNEANAAEFLSDPIDNDEEYDVQSDDESEDDEQTLEEDEALITEEERLEELAALRYEVDLPLEELLKRYSEEKGPVSEESSPEHSDDDNKEVRAGDGSENRDNILSVSKLGSSNSSMVSGRRCDESNGGLTTPADNIAEDGTCQSENMAYDFSDEEEDGDFLLVTEDNDDETTLSEEEKLEKMGAINPKDEVKSYGKHREHESEDAASLSEDLLDSSLHEDDRKKDTAVSVDEDVKPIEHMAFVQSQTEEQHCEAPHENPEARDSENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGSHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVISTSPFSWVDLRGFGFLFTHLDYSMTSWESDEVKAIETPASLIMERADMNGLQVIRPKSKDQRSFQGTNTFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPVYSTNLRDLLTIRHPVYDIHQVKANPRSYMYSSKLADIVLSPVERFQRMVDVVESFMFAIPAARAPPPVCWCSRSETSVFCHPSYKQKCSEVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGAYNTEFFKKLDPMELFLGHRTLVVKNMQKEKSQNIGDEVSVSNADLEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDDDEYVNEDDTKVDEPSELAESVSKSSKENALMLVGSDPKEERPLSVSIKEDDVDMLADVKQMAVAAAAAGQAISAFENHLRPIDRYAIRFLEVWDPIIDKAALEYEVRFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDTDFATEAYRQQVEALAQHQLMEELENEAKRKEEADEESCDPGITQTPRDSKPRPKKKLKKPKFKSLKKGSLASESPPMKEESLTDPLSIDDEIVTSLDLVSPNSTMQKKRKKPKFVADCEKEKTLKKSKRAADICVSDSDNALLGLPYDHAESNQCESMVESEQKPPSRSKMGGKISITLMPVKRILTIKPEKVKKGNSWSKDGIPSADFWLPQEDAILCAVVHEYGSNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQKYVLSTADNANHERGNSAASGKSLLKVTEDNVRMLLDVASEQENRELLLQKHFFALLSSVWKAASRVDQRQNPPPAQNGHYFDHSFFTSMGHNSQSLLKKPSERMAVTNLAQSRKLLAAALDETSSRQQDDKISLSNQGDDVPVTTDQLDLTLEFPKDDSDTLISFPSVINLSIQGTEPLPSLIYPNGEDHHLRACGSVAEDRFREAARACEEDSCRWASSVFPTNDSRSRPGSKMQASGKHRSSISDSIKPSKSKSKRNSMDTSEMRHQRVEPLFQSLPSLQPKDLRIDLNSLAMDETVTDDMDCNLPFVPNEENLLDPLGMVPHDFVAGLISGLDDCSELPEYTEIG 1969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1550 1969 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 681 746 - -
Lele13g1550 1969 ProSiteProfiles HSA domain profile. 22 103 IPR014012 -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 1841 1889 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 201 279 - -
Lele13g1550 1969 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 980 1130 IPR001650 -
Lele13g1550 1969 Coils Coil 1369 1392 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 201 230 - -
Lele13g1550 1969 Pfam HSA domain 27 83 IPR014012 -
Lele13g1550 1969 Pfam SNF2-related domain 452 724 IPR000330 GO:0005524|GO:0140658
Lele13g1550 1969 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 447 612 IPR014001 -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 1380 1442 - -
Lele13g1550 1969 Gene3D - 681 731 - -
Lele13g1550 1969 Gene3D - 1562 1623 - -
Lele13g1550 1969 Gene3D - 933 1195 IPR027417 -
Lele13g1550 1969 FunFam Photoperiod independent early flowering protein 1562 1623 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 307 342 - -
Lele13g1550 1969 ProSiteProfiles Myb-like domain profile. 1566 1619 IPR001005 -
Lele13g1550 1969 CDD SF2_C_SNF 965 1100 - -
Lele13g1550 1969 SMART ultradead3 431 624 IPR014001 -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 144 177 - -
Lele13g1550 1969 CDD DEXQc_SRCAP 435 657 - -
Lele13g1550 1969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 657 IPR027417 -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 233 279 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 1 33 - -
Lele13g1550 1969 PANTHER HELICASE SRCAP-RELATED 15 83 - -
Lele13g1550 1969 Coils Coil 818 838 - -
Lele13g1550 1969 Coils Coil 1321 1341 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 1867 1889 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 113 130 - -
Lele13g1550 1969 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 942 1196 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 1841 1866 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 299 342 - -
Lele13g1550 1969 SMART helicmild6 1006 1089 IPR001650 -
Lele13g1550 1969 SMART bromneu2 23 94 IPR014012 -
Lele13g1550 1969 FunFam Photoperiod-independent early flowering 1 405 680 - -
Lele13g1550 1969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 1162 IPR027417 -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 113 178 - -
Lele13g1550 1969 MobiDBLite consensus disorder prediction 1407 1421 - -
Lele13g1550 1969 Pfam Helicase conserved C-terminal domain 977 1089 IPR001650 -
Lele13g1550 1969 Gene3D - 404 680 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1550 Lele-ChrLele13 24640253 24652135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1550 455 727 RAD5 or RAD16-like Gene Family AT5G43530 29.193 1.29e-28 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele13g1550 SNF2_N 4.4e-69 CL0023