Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1541 ATGAGTTCCCCCCCTGCTACTGAAGCCGCCTCCAACTCCCCGACGGAGTCCCTCAACGGCTTGAAATTCGGGCAGAAGATATACTTTGAGGATGTGGGCGTGGGAGGTGGTGTGAAATCCAGCGGCGGGTCGTCGTCCTCCTCCTCAGGGCTGACCCCGACGAAGAAAGGAAGGGGTTGTGGGGCTCAGCCTCCGTGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAGGTCTGTAGTATGCACTCCAAATCACCCAGGGTCGTTGTCGCTGGGCAAGAGCAAAGGTTTTGCCAACAGTGTAGCAGGAACTTTGTCTATGCGCATCTAGCCATTCTTGAGTCGGGAAAGCTAATATCTTGTTTGATAGCCTTGACCAGGTTCCACCAGCTTTCTGAATTTGATCAAGTAAAACGAAGTTGTCGCAGGCGGCTTGCTGGTCATAATGAAAGGAGGAGAAAACCCCCATCCAGCTCCTTGATGGCTTCTCGATATGGCCGACTTGCTCCAGCTAATTTTGATAACAGCAACAGCAGAGGTGGTGGATTTCTGATGGAATTCGGTCCATATCCGAAACTTAGCCTGAGAAATTCAATGCCAACACCAACATCATCTGAGCAGCTTCCTGGGAATCCAACAATGACACTTCCATGGCAGGGCCATTCAGAGTCTCCCTCGTTTCTTTTCTTGCAAGCAGGTTGTTCTCCAGTTGGTGGGACAAGCTACTCTGGATCCAGAAATTCTTCCTCAGGGGAAAGCTTTTCAGGATTGACGGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGCCCCTCGAAACAGAGCACCAAGTCTTGGTACAAATAATTTGATGAACTTTGACGACACGCCCATCACACACCTCCCTGCATCTTCTCATCATCATGGGCACGGTACATCCCTCCACCATCAACTTTCAAACGCCTCATGGTGTTTCAAGGGCATTGATGCTACTGCTGCTGCTGATAACTGTTCTCATTACACTCTCCCTGACCTTGGCCTGGGTCACCAGATTTCGCAGCCTATCAGCAGCTCTCTTCCTGGGGAGCTTCTTGTGTCACAACAGGGCAGGAGGCATTACATGGATCTAGAGCAGTCCAGGGTGTATGAGGATTCTCAGCATCACATGCACTGGATGAGACAGTATTTTGGTTTGTTGGAAGTACGCCCAGATGAAATAGTTGATACTAAAAGATCAGAGATAGTTGATACTAAAAGATCAGAGATAGCATTGATGATTCAAGCCTGTATTGTTGACGCGGAGAGCAAGCAAGATGAAGTTGATGTTCTCAGTTGTTAG 1356 0.4919 MSSPPATEAASNSPTESLNGLKFGQKIYFEDVGVGGGVKSSGGSSSSSSGLTPTKKGRGCGAQPPWCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPRVVVAGQEQRFCQQCSRNFVYAHLAILESGKLISCLIALTRFHQLSEFDQVKRSCRRRLAGHNERRRKPPSSSLMASRYGRLAPANFDNSNSRGGGFLMEFGPYPKLSLRNSMPTPTSSEQLPGNPTMTLPWQGHSESPSFLFLQAGCSPVGGTSYSGSRNSSSGESFSGLTDSSCALSLLSNQAWAPRNRAPSLGTNNLMNFDDTPITHLPASSHHHGHGTSLHHQLSNASWCFKGIDATAAADNCSHYTLPDLGLGHQISQPISSSLPGELLVSQQGRRHYMDLEQSRVYEDSQHHMHWMRQYFGLLEVRPDEIVDTKRSEIVDTKRSEIALMIQACIVDAESKQDEVDVLSC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1541 451 SUPERFAMILY SBT domain 136 170 IPR036893 GO:0003677|GO:0005634
Lele13g1541 451 SUPERFAMILY SBT domain 65 114 IPR036893 GO:0003677|GO:0005634
Lele13g1541 451 MobiDBLite consensus disorder prediction 39 54 - -
Lele13g1541 451 Pfam SBP domain 67 113 IPR004333 GO:0003677
Lele13g1541 451 Pfam SBP domain 135 164 IPR004333 GO:0003677
Lele13g1541 451 ProSiteProfiles Zinc finger SBP-type profile. 64 165 IPR004333 GO:0003677
Lele13g1541 451 Gene3D - 58 152 IPR036893 GO:0003677|GO:0005634
Lele13g1541 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 366 IPR044817 GO:0003677
Lele13g1541 451 MobiDBLite consensus disorder prediction 38 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1541 Lele-ChrLele13 24590308 24593823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1541 21 397 SBP-box Gene Family AT3G57920 37.121 1.12e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele13g1541 SBP 3.5e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0778 06 4816584 4818040 Lele13g1541 13 24590308 24593823 CCT
Lele07g0954 07 5711390 5715552 Lele13g1541 13 24590308 24593823 CCT
Lele08g0774 08 4831699 4833160 Lele13g1541 13 24590308 24593823 CCT
Lele13g1541 13 24590308 24593823 Lele05g0924 05 5686009 5690678 CCT
Lele13g1541 13 24590308 24593823 Lele06g0784 06 4852944 4861936 CCT
Lele13g1541 13 24590308 24593823 Lele07g0962 07 5762274 5767381 CCT
Lele13g1541 13 24590308 24593823 Lele08g0779 08 4873814 4877914 CCT
Lele13g1541 13 24590308 24593823 Lele15g0884 15 5133857 5136900 hybridization