Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1521 ATGGAGACCGATAGTGGTGACACCAAATCCAAGATGGAAGACTATGAAGTGGTTGAGCAAATTGGCAGAGGAGCATTCGGCTCCGCTTTTCTTGTTCTCCATAACTCTGAGAATAAGAAGTATGTGTTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTCAAACGAACAGCGCACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGTGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGCTGATAGCTGTGGACTATCTGCACTCTAATCGTGTACTCCATAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACGACATTCGTCTCGGTGACTTTGGTCTGGCAAAGCTGCTTAGTTCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAACTATATGTGTCCTGAGCTACTTGCAGATATACCCTATGGTTATAAATCTGATATATGGTCACTTGGTTGCTGCATGTTTGAAATTGCCGCCCATCAACCAGCATTCCGTGCTCCGGATATGGCCGGGCTTATCAATAAAATAAATAGATCCTCCATTTCTCCATTGCCTATTGTTTATTCTTCCACCTTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCAACAGCAGCTGAATTGTTAAGGCATCCTCTTTTACAACCATATGTTCTCCGGTGTCGTAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAGCTCAAAGGATAAAACAAAGAGGTCTTATAAATCTGGTGGCAGAAAAGAACGTAAGGACAAAGAAGTGGGATTAGAAAACCTTTTAGTTAGGGTTCATCCATTTGAGGGAAATGAAGATCTGCCTAACAATGGCAAGCTATCAGTCTCAAGCAGTGCAGAAGACATTCTTCAGACCAGGCTGGTTGATCCTACCAGCTTCATAACTGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGTTCAACAACATCTGAATCAACCATTTGCAGCATGTGCAAGGAAGCAGACTATAACAGTACACCTACAAGGGAGACAAATGACAATGAAATTACATCAAAGAGTATGCCAGGTCCTAAGCATGGAGAACAAGTATTTTCTGCCGAACAACTTCAAAAATCAGAAGGGGTTGACATAATTGCAGTGACCACGAAAGTTGAAGATGCTTTTCCTAATGGAGATTTCGATAAAGCTGAAGTGCAGAGAGATGTCAATCTTGAGGACTTCAGGAAATCAACAGCATCAAGCGAAGGAAGCACTGATAAAGGTGGGTCTCTTGATGGGGAAATGTCACCCCCAGCGTTGCAGCCTAGTAGTAGTAAGGTTGAAGATAACTCTGAATCAGGAGGAGTCTACTTACAGAAAAGGGAAGGCACAAATACATTTATAGAAGGCTCACATATGTGCTTATCTTCTGAGAATCATGACACACTTGCAAGTAAGGATGAAGGAAGAGAAAAGCCACACGACCTCGGTTGCTCCACGCATAAAGAAAATGATAGTGCTTGTGTGGTTGATCAGACACCAAGTGACAACTCATCAAGTACACTTACTGCAATAGGGGGTGATGAAGCGAAGAGCGAGTTGGATAGTTCCTGCGAGGAAAGAGCTCATGCTCTAGAGACTCTGCTTGAATTATGTGCTGAGCTACTCAAGCAACAGAAACTTGAAGAGCTTGCTGGTGTGCTGAGACCATTTGGGCCGGAAGCTGTCTCTTCGAGAGAGACAGCAATATGGTTGACAAAGAGCCTCATGTCCGCACAAAAATTCAATACTGAAACCTAA 1935 0.4289 METDSGDTKSKMEDYEVVEQIGRGAFGSAFLVLHNSENKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLSSEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNVLPVYPIVSSKDKTKRSYKSGGRKERKDKEVGLENLLVRVHPFEGNEDLPNNGKLSVSSSAEDILQTRLVDPTSFITESSTSISGSKDGSTTSESTICSMCKEADYNSTPTRETNDNEITSKSMPGPKHGEQVFSAEQLQKSEGVDIIAVTTKVEDAFPNGDFDKAEVQRDVNLEDFRKSTASSEGSTDKGGSLDGEMSPPALQPSSSKVEDNSESGGVYLQKREGTNTFIEGSHMCLSSENHDTLASKDEGREKPHDLGCSTHKENDSACVVDQTPSDNSSSTLTAIGGDEAKSELDSSCEERAHALETLLELCAELLKQQKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKFNTET 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1521 644 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Lele13g1521 644 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Lele13g1521 644 CDD STKc_Nek 14 269 - -
Lele13g1521 644 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Lele13g1521 644 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 567 - -
Lele13g1521 644 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Lele13g1521 644 MobiDBLite consensus disorder prediction 389 404 - -
Lele13g1521 644 MobiDBLite consensus disorder prediction 482 499 - -
Lele13g1521 644 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1521 644 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1521 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Lele13g1521 644 MobiDBLite consensus disorder prediction 389 412 - -
Lele13g1521 644 Gene3D Transferase(Phosphotransferase) domain 1 95 283 - -
Lele13g1521 644 SUPERFAMILY Protein kinase-like (PK-like) 12 299 IPR011009 -
Lele13g1521 644 MobiDBLite consensus disorder prediction 456 499 - -
Lele13g1521 644 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1521 Lele-ChrLele13 24478034 24482729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1521 21 300 MAP Kinase Kinase Kinase AT1G53570 31.579 7.88e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele13g1521 Pkinase 2e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0895 05 5519534 5524394 Lele13g1521 13 24478034 24482729 CCT
Lele13g1521 13 24478034 24482729 Lele15g0905 15 5257321 5262008 hybridization
Lele13g1521 13 24478034 24482729 Lele16g0923 16 5224835 5229408 hybridization