Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1520 ATGGCCGATCCTTTCTCCAATTTCTTCTCTCCTCCTCCTCCTTCTGGATTTTTCCAATTTAATCCCATCCCTTACTACTATCCCCCTCGCCCTCCTACTCCTTCTCCAGTCTCACACCAACACCACCATCATCATCCCTATCTCCACAACTTCATCTCTTCTTCTTCTTCGCCCCCTACTTCCCCACCTCTCAGAGAGGCCCTCCCTCTTCTCAACCTCAACCCCACTAATAAGCCACATCATGATCATCACCGCCACCAGCACTCTTGCAGTACTTCCATGGAAGTGGAGGACGCTACTGCTCCTAATAAGACTAAAGAAGAAGACGATGAAGAGGAGGATGAGGAAGATGATGAGAATAGTGTGACTGTTGCACTTCACATAGGCCTCCCTAGCCCTAGTGCTGCTGAGATGGCCTCTATCCTCTCTTCTTCCTCCTCTCACGCACCAGAAGCAGCCGCAGACGGCGATGCTCTTGCTGATAATTCTTCTTGCTCTGGACTCTCCAGGCTCAACAAGGGCCAGTACTGGATCCCTACTCCTACTCAGATTCTCATTGGTCCTACCCAGTTCTGTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCTCTGAGAGGTACACAGCCAACGGGCATGTTGAGGCTTCCTTGTTATTGTTGTGCCCCAGGTTGCAGGAACAACATTGACCACCCAAGGGCTAAGCCCCTTAAGGATTTTAGAACCCTTCAGACCCACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAAGCCTTCGCTGTCAGAGGCGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTATTGTATTTGTGGCTCTGATTTCAAACACAAGAGGTCTCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCCGCTTATGGGATCGATGGCTTCGAAGAAGAAGATGAACCAGCATCCGAAGTAGAGCAAGATAATGAATCCACCCAGTGA 1059 0.4929 MADPFSNFFSPPPPSGFFQFNPIPYYYPPRPPTPSPVSHQHHHHHPYLHNFISSSSSPPTSPPLREALPLLNLNPTNKPHHDHHRHQHSCSTSMEVEDATAPNKTKEEDDEEEDEEDDENSVTVALHIGLPSPSAAEMASILSSSSSHAPEAAADGDALADNSSCSGLSRLNKGQYWIPTPTQILIGPTQFCCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1520 352 MobiDBLite consensus disorder prediction 48 122 - -
Lele13g1520 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
Lele13g1520 352 FunFam Zinc finger protein WIP2 244 326 - -
Lele13g1520 352 Gene3D Classic Zinc Finger 190 213 - -
Lele13g1520 352 Gene3D Classic Zinc Finger 253 328 - -
Lele13g1520 352 SUPERFAMILY beta-beta-alpha zinc fingers 257 295 IPR036236 -
Lele13g1520 352 SMART c2h2final6 275 295 IPR013087 -
Lele13g1520 352 SMART c2h2final6 191 213 IPR013087 -
Lele13g1520 352 ProSitePatterns Zinc finger C2H2 type domain signature. 192 213 IPR013087 -
Lele13g1520 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 295 IPR013087 -
Lele13g1520 352 SUPERFAMILY beta-beta-alpha zinc fingers 186 213 IPR036236 -
Lele13g1520 352 PANTHER ZINC FINGER PROTEIN WIP2 39 349 IPR043584 GO:0003700|GO:0010468
Lele13g1520 352 MobiDBLite consensus disorder prediction 136 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1520 Lele-ChrLele13 24466609 24468842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1520 1 352 C2H2 Transcription Factor Family AT3G57670 61.929 3.20e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g1520 zf-C2H2_6 4.3e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0893 05 5501649 5503837 Lele13g1520 13 24466609 24468842 CCT
Lele13g1520 13 24466609 24468842 Lele15g0906 15 5272047 5274273 hybridization
Lele13g1520 13 24466609 24468842 Lele16g0924 16 5238986 5241226 hybridization