Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1516 ATGTTCTATCCCGAGCAGAAGGGACTAAATTCTACCTTTACGTATAAGTGCGGAACGGGAGCAGTAGCGGTGGCAATGGAGAGAGGAAACTCTAAGAAGAAAGCATCAACTCTCTCTTTGGAGCAATTCATCTCACTCATGGCCCCTCTTATTGATTTGGAAAAGGAAACTGAGATATCAAGCTCAATCACTTCAGGCGCGTCAAGAAGTTTGGATACTGCGCAGAAAAGGGGCTCGGCAATCCTCAATTTGAAATGTGTCGATGTTCAGACAGGGCTTATGGGGAAGTCTCTTGTTGAGTTCCAGTCTACCAAAGGAGATGTTCTTCCCGCACACAAGTTCAGTACCCACGATGTTGTTGTTTTAAAACTCAGCAAAGCTGATTTAGGTTCCCCTGCTCTTGGACAAGGTGTAGTTTACCGCTTAAAGGACTCCTCGATAACAGTTGCCTTTGATGATATACCAGAAGATGGTTTAAATAGTCCCCTCAGGCTGGAGAAAGTGGCAAATGAGGTGACATACCGTAGGATGAAGGATGCATTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTGCTGACCTAATTCCTGTCTTGTTTGGAGAGAGGCCGCCAACAGTGTCCAAGAAGGATGTGTCATTCACTCCATTTAACCCCAACCTTGATCACTCTCAGAAATTCTGTATTTCTGAATTTTCAAAGAAAGATGCAATCTCGAAGGCCCTCTCGTCGAAGAATGTATTTTTGCTCCATGGGCCTCCTGGAACAGGAAAAACGACCACAGTGGTGGAAATCATATTACAAGAAGTGAAGCGTGGATCAAAAATTCTTGTTTGTGCCGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGACTTGTTCCGCGTAGAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTTGACAGTGCACTGGATGCTCAGGTACTTCGAGGAGACAATAGTTCACTTGCAAATGACATTCGGAAGGAAATGAAGGCATTAAATGGAAAGTTGTTGAAAACCAAAGACAGAAATACAAGGAGGGACATTCAGAAGGAACTGCGAACTCTGTCCAAAGAAGAGCGGAAAAGACAACAGCTTGCTGTAACAGACGTAATTAAAAGTGCTGACGTGATATTAACCACTTTGATTGGGGCTTTTGCTAAGAAGCTGGATAACAGTTCATTTGACTTGGTCATTATTGACGAAGCTGCTCAGGCACTTGAGATAGCATGCTGGATACCTATACTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCACCAACCATCCAAAGTGTTGAGGCCGAGAAGAAAGGATTAGGACGAACCCTTTTTGAACGACTTGCAGATATGTATGGGGATGAAGTCACATCTATGCTAACCGTCCAGTACCGCATGCATGAACTTATCATGGAGTGGTCTTCTAAAGAGCTCTACAACAGCAAGGTCAAAGCCCATGCAAGTGTTGCTGCACATATGCTGTTTGATCTTGAGGATGTGAAGAGGACCTCTTCAACTGAACCAACACTTCTTCTCATAGACATAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCATGAATGAAGGTGAAGCTGAAGTTGCCATGGCCCATGCAAAGAGACTTGTGCAGAGTGGTGTGCTGCCTTCTGATATTGGAATCATTACCCCGTATGCTGCACAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGAACTCGCTCAAGGATCTTGAAATCTCAACAGTGGATGGCTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCTAATTCAAAAAAAGAGATCAATTTCTTTGAATATATTTCTAAGGTGGGCTTTCTAAGTGATCGTCGCCGAATGAATGTGGCTGTGACGCGGGCGAGGAGGCAATGTTGCCTTGTCTGTGACTCAGAAACTGTCAGTTCTGATGGATTCCTAAACCGATTGATTGAGTATTTCGAAGAGAATGGGGAGTATCAGAGTGCATCTGAGTATCAGAATGAATAG 2073 0.439 MFYPEQKGLNSTFTYKCGTGAVAVAMERGNSKKKASTLSLEQFISLMAPLIDLEKETEISSSITSGASRSLDTAQKRGSAILNLKCVDVQTGLMGKSLVEFQSTKGDVLPAHKFSTHDVVVLKLSKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALVQLSKGVHKGPAADLIPVLFGERPPTVSKKDVSFTPFNPNLDHSQKFCISEFSKKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILVCAASNIAVDNIVERLVPRRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSSLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSKEERKRQQLAVTDVIKSADVILTTLIGAFAKKLDNSSFDLVIIDEAAQALEIACWIPILKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADMYGDEVTSMLTVQYRMHELIMEWSSKELYNSKVKAHASVAAHMLFDLEDVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDLEISTVDGFQGREKEAIIISMVRSNSKKEINFFEYISKVGFLSDRRRMNVAVTRARRQCCLVCDSETVSSDGFLNRLIEYFEENGEYQSASEYQNE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1516 690 Coils Coil 332 352 - -
Lele13g1516 690 TIGRFAM TIGR00376: putative DNA helicase 379 685 IPR004483 GO:0003677|GO:0005524
Lele13g1516 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 665 IPR027417 -
Lele13g1516 690 CDD SF1_C_Upf1 479 676 IPR041679 -
Lele13g1516 690 FunFam P-loop containing nucleoside triphosphate hydrolase 477 690 - -
Lele13g1516 690 Pfam AAA domain 454 659 IPR041679 -
Lele13g1516 690 FunFam DNA-binding protein SMUBP-2 66 168 - -
Lele13g1516 690 Gene3D - 66 168 - -
Lele13g1516 690 SMART ultradead3 218 478 IPR014001 -
Lele13g1516 690 Pfam AAA domain 234 445 IPR041677 GO:0004386
Lele13g1516 690 SMART AAA_5 245 463 IPR003593 -
Lele13g1516 690 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 35 689 - -
Lele13g1516 690 Gene3D - 477 690 IPR027417 -
Lele13g1516 690 Gene3D - 49 461 IPR027417 -
Lele13g1516 690 CDD DEXXQc_SMUBP2 221 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1516 Lele-ChrLele13 24426085 24431391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1516 235 414 Core DNA Replication Machinery Family AT1G08840 27.778 3.74e-10 61.6