Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1515 ATGGGAACTTGCAGAAACTCTCCCATGAAGCCATGTAAGAAGGGGCCAGCCAGAGGGAAGGGTGGCCCTCAGAACGCTTTGTGGGAGTATCGAGGTGTTCGACAAAGAACGTGGGGCAAATGGGTCGCTGAGATAAGAGAGCCCAAGAAGAGAACCAGGCTGTGGCTTGGTTCTTTTGCCACTGCTGAAGAGGCTGCCATGGCTTATGAGGAAGCTGCCATGAGACTCTATGGTCCTGATGCTACTTCAATCTTCCTCACCTTCAACCAACCTCCAGTTCCGTTCCAACGTCTCAGAAGTTCAAACGATATTCAGATGACAGGAGGCAAAAATGTTTATAGTCCTCCAAAGGAACAAAAAGCTGAAGAAATATCAACAAATATCATGATCGAAGATGTTGAGGAAAAACCCCAGATTGACCTACATGAGTTTCTTCAACAGCTGGGTATACTGAAAGAAGAAAGACAATCACAATGA 477 0.4633 MGTCRNSPMKPCKKGPARGKGGPQNALWEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYEEAAMRLYGPDATSIFLTFNQPPVPFQRLRSSNDIQMTGGKNVYSPPKEQKAEEISTNIMIEDVEEKPQIDLHEFLQQLGILKEERQSQ 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1515 158 CDD AP2 30 59 IPR001471 GO:0003700|GO:0006355
Lele13g1515 158 MobiDBLite consensus disorder prediction 1 24 - -
Lele13g1515 158 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lele13g1515 158 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lele13g1515 158 SUPERFAMILY DNA-binding domain 30 82 IPR016177 GO:0003677
Lele13g1515 158 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Lele13g1515 158 ProSiteProfiles AP2/ERF domain profile. 29 89 IPR001471 GO:0003700|GO:0006355
Lele13g1515 158 SMART rav1_2 29 93 IPR001471 GO:0003700|GO:0006355
Lele13g1515 158 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Lele13g1515 158 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 82 - -
Lele13g1515 158 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1515 Lele-ChrLele13 24424849 24425486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1515 5 158 AP2-EREBP Transcription Factor Family AT3G57600 47.525 8.03e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g1515 AP2 3.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0888 05 5461226 5462056 Lele13g1515 13 24424849 24425486 CCT
Lele13g1515 13 24424849 24425486 Lele15g0911 15 5309141 5309773 hybridization
Lele13g1515 13 24424849 24425486 Lele16g0930 16 5278056 5278727 hybridization