Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1514 ATGAATCACTTGACAGTGGAAATTGAAGATAGTTTTGCAAGCTTGCTTGACCTTGCAGCCAATAATGACGTTGAGCATTTCAAAAGATCAATTGAACGTGATCCTTCCTCTGTAGATGAGGTTGGCCTGTGGTATGGTCGCCAGAAGGGGTCAAAGCAGATGGTCAACGAGCACCGAACGCCTTTGATGGTTGCTGCTACTTATGGCAGCACTGATGTCATCAAGTTAATTCTTTCATTATCTGATGCAGATATTAATCGGTCATGTGGGCTTGACAAAAGCACGGCCCTGCATTGTGCGTCATCAGGTGGGGCTGTAAATGTTGTTGATGCGGTGAAATTGCTTCTGGCAGCTGGTGCTGATCCAAATTCCGTCGATGCCAATGGTCACTATCCTGTTGATGTTATTGTGGTACCTCCCAAGCTTGCACAGGTGAGAAGTTTTCTTGAAGAACTTCTTCAAACAGATTGTTCCATGGCAGGGTGTGGTCTTAGGGTGGTAACGACTACAACAAATTCAAACTCTCCCCCTCCATCAACTTCTCCTGACAATGGGTCTCCTTCTACTCTAGATTTCCATTTGAAGCTGAAGTTAAATGACGCTAACACTTCATCTGCCTCAGAGAAGAAAGAATTTCCTGCTGATCCATCTCTTCCCGACATCAAAAACAGCATCTACTCAACTGATGAGTTCAGAATGTTTTCTTTCAAGGTTCGACCATGTTCACGTGCATATTCACATGATTGGACTGAATGTCCCTTTGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCGAGGAAGTTTCATTATAGCTGTGTCCCTTGCCCTGATTTTCGGAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTCGAGTGCTGGCTGCATCCAGCTCAATATCGGACCCGCCTCTGCAAGGATGGGACCAGTTGCTCAAGAAGGGTTTGCTTCTTTGCCCATACAGTTGAAGAACTTAGGCCGTTGTATGTTTCAACTGGTTCTGCAGTTCCATCACCACGCTCAAGCACATCATCTGCCATGGATTTTGCTGCAGCCATGAGCTTGTTACCTGGCTCCCCTTCTTCAATGTCTGTCATGTCTCCTTCGCCGTTCACTCCACCTATGTCACCGTCTGCCACTGGCATGTCACACTCGTCTGTTGCTTGGCCTCAGCCTAATGTTCCAAACCTGCATCTGTCGGGAAGTAATATTCACTCCAGTCGTTTGAGATCTGCATTCAGTGCTAGAGATATCCCCCTGGAAGACTTTGATTTGTTGCCCGATTATGATGTTCAGCAACACCAGCTATTTAATGAGATGTCTTGCCTTTCCCAGCAGTCTATAAATTCTAATAACCCAAACCGCTCTGGTCGTATGAAGACTCTGACGCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTCGGTTTGCTGATCCAACATTGAGTTCAGCCGTCTTTTCACCCACACACAAATCAGCCGTCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTTTCACCTGTGAATACAAATTTTTCTTCCAAGAATGTTGAACATCCTTTTTTACAGGCCTCATTCCAAACGTCAGGAAGGATGTCTCCACGTAACGTGGAACCTATCTCACCAATGGGCTCTAGGCTTTCTGTGCTAGCTCAACGTGAAAAGCAGCAGCAGTTTCGTAGCCTTAGCTCTCGGGATCTTGGCGCCAACTCTGCCGCTGCCATTGCTGCTGCCGGCGGTTTCAATGACAGTTCTTGGTCAGAATGGGGATCCACCAACGGTAAATTGGATTGGGCTGTCAATACTGATGAATTGGGCAAGCTCCGCAGATCCTCGTCGTTCGAGTTTGGGAGCAACGGCGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTTCAACTGAGATTAAGGAGAAATTGGGAACAGCCGTTTCGAATATGAGCACTCGTATGAAACACAAATTACCAAGGGTCAAGTTGTTGGGAACTACAAATTGGCCCAGTTTTGGGGATGAAAGTACAGGACACGATGCATCAGATATTTCTCTCGTGGCATGGACATCCAGAATTGTGGATGCCATGCTGCCGGGAGATTAG 2136 0.4672 MNHLTVEIEDSFASLLDLAANNDVEHFKRSIERDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSTDVIKLILSLSDADINRSCGLDKSTALHCASSGGAVNVVDAVKLLLAAGADPNSVDANGHYPVDVIVVPPKLAQVRSFLEELLQTDCSMAGCGLRVVTTTTNSNSPPPSTSPDNGSPSTLDFHLKLKLNDANTSSASEKKEFPADPSLPDIKNSIYSTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTVEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSATGMSHSSVAWPQPNVPNLHLSGSNIHSSRLRSAFSARDIPLEDFDLLPDYDVQQHQLFNEMSCLSQQSINSNNPNRSGRMKTLTPSNLDDLFSAESSSPRFADPTLSSAVFSPTHKSAVLNQFQQQQSLLSPVNTNFSSKNVEHPFLQASFQTSGRMSPRNVEPISPMGSRLSVLAQREKQQQFRSLSSRDLGANSAAAIAAAGGFNDSSWSEWGSTNGKLDWAVNTDELGKLRRSSSFEFGSNGEEPDLSWVQSLVKESSTEIKEKLGTAVSNMSTRMKHKLPRVKLLGTTNWPSFGDESTGHDASDISLVAWTSRIVDAMLPGD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1514 711 SUPERFAMILY Ankyrin repeat 17 136 IPR036770 -
Lele13g1514 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Lele13g1514 711 MobiDBLite consensus disorder prediction 371 392 - -
Lele13g1514 711 MobiDBLite consensus disorder prediction 168 189 - -
Lele13g1514 711 PANTHER UNKEMPT FAMILY MEMBER 17 644 IPR045234 -
Lele13g1514 711 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Lele13g1514 711 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Lele13g1514 711 Gene3D - 7 158 IPR036770 -
Lele13g1514 711 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lele13g1514 711 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Lele13g1514 711 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lele13g1514 711 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lele13g1514 711 Gene3D - 270 333 - -
Lele13g1514 711 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Lele13g1514 711 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lele13g1514 711 Pfam Ankyrin repeats (3 copies) 53 126 IPR002110 GO:0005515
Lele13g1514 711 MobiDBLite consensus disorder prediction 168 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1514 Lele-ChrLele13 24418926 24421228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1514 6 661 C2H2 Transcription Factor Family AT5G12850 54.790 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele13g1514 Ank_2 3.7e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1514 13 24418926 24421228 Lele05g0888 05 5461226 5462056 CCT
Lele13g1514 13 24418926 24421228 Lele06g0744 06 4579842 4580672 CCT
Lele13g1514 13 24418926 24421228 Lele07g0927 07 5533202 5534032 CCT
Lele13g1514 13 24418926 24421228 Lele08g0744 08 4632222 4633049 CCT
Lele13g1514 13 24418926 24421228 Lele15g0912 15 5313615 5315648 hybridization
Lele13g1514 13 24418926 24421228 Lele16g0931 16 5282121 5284124 hybridization