Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1508 ATGGGTAACTGTTGCATTACTCCATTTCGCTCTCAGGAGAAGAAAAAGAAGGGGAATAAAACTAAACAGAACCCGTGTGGGATTAATTTCGGTCAAAATTATGGAAAGGGAAGCAAAATTAACGTTTTGAGGGAGCCAACGGGCCGCGAAATTGAGCTCAAATACGAGCTGGGTCGCGAGCTGGGAAGAGGGGAATTCGGAGTTACCTACCTATGCACCGATAAAGAGACCGGTGATAATTTCGCTTGTAAATCGATATCGAAGAAAAAGCTGAGAACAGCCATTGATATCGAGGATGTTAGGAGAGAGGTTGAGATCATGAAGCATTTGCCACCGCACCCAAATATTGTGAACTTAAAGGACACTTACGAGGACGACAATGCTGTCCATCTTGTGATGGAACTGTGCGAGGGAGGAGAATTGTTCGACCGGATAGTTGCGCGCGGACACTACACAGAAAGGGCTGCCGCAGTTGTCATGCGGACAATCGTTGAAGTCGTCCAGGCGTGCCACAAACATGGCGTGATGCATAGGGATTTGAAGCCTGAGAACTTTTTGTTTGCAAACAAGAAGGAAACATCACCTCTGAAGGTTATTGATTTTGGATTGTCAGTGTTCTTCAAACCTGGTGAAAGATTTAACGAGATAGTTGGAAGCCCCTATTATATGGCTCCTGAGGTATTAAAACGAAATTATGGTCCAGAAGTAGATATCTGGAGTGCTGGAGTAATTCTGTACATCTTACTTTGTGGCGTTCCACCATTTTGGGCAGAAACTGAACAGGGAGTTGCCCAGGCAATCATACGATCTGTCATTGATTTTAAAAGGGATCCCTGGCCTAAGGTTTCCGACAATGCAAAAGACCTTGTGAAGAGGATGCTTAATCCCAACCCACAGCAGCGTCTTACTGCTCAGGAAGTGTTAGATCATCCATGGTTACAGAATGCCCAAAAAGCTCCTAATGTTTCACTGGGAGAAACTGTTAGGGCAAGGCTCAAGCAATTCTCTGCCATGAACAAGCTCAAGAAAAGAGCTCTAAGGGTGATTGCAGAGTACTTGTCAGTAGAAGAAGTTTCTGGATTAAAAGAGAGATTCCAGTCGATGGATACAAGTAACAGAGGCAAGATTAACAGTGATGAGTTACGAGCAGGGTTGCATAAATTAGGGAATCCTATTAGTGATGAAGACCTCCGAATTCTGATGGAAGCTGGTGACGCAGATAAGGATGGGCACTTGAATTATGGAGAATTTGTGGCCATTTCTGTTCATCTGAAGAAGATGGGCAATGATGAGCATCTTCACAAAGCTTTCCAATTTTTTGACAAGAACAATAGTGGGTATATAGAAATTGAGGAGCTCTGTGAGGCCTTAGCCGATGAAGTTGATACAAACAATGAAGTCATCAATGCAATTATGCATGATGTGGATACAGATAAGGATGGAAAAATAAGCTATGAGGAATTCGATGCAATGATGAAGGCCGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCACGAGAGAGATTTAGTAGTCTGAGTCTGAAATTGCTGAGAGAGGGGTCGTTGAGATAA 1575 0.4362 MGNCCITPFRSQEKKKKGNKTKQNPCGINFGQNYGKGSKINVLREPTGREIELKYELGRELGRGEFGVTYLCTDKETGDNFACKSISKKKLRTAIDIEDVRREVEIMKHLPPHPNIVNLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAVVMRTIVEVVQACHKHGVMHRDLKPENFLFANKKETSPLKVIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVIDFKRDPWPKVSDNAKDLVKRMLNPNPQQRLTAQEVLDHPWLQNAQKAPNVSLGETVRARLKQFSAMNKLKKRALRVIAEYLSVEEVSGLKERFQSMDTSNRGKINSDELRAGLHKLGNPISDEDLRILMEAGDADKDGHLNYGEFVAISVHLKKMGNDEHLHKAFQFFDKNNSGYIEIEELCEALADEVDTNNEVINAIMHDVDTDKDGKISYEEFDAMMKAGTDWRKASRQYSRERFSSLSLKLLREGSLR 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1508 524 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Lele13g1508 524 CDD EFh 432 493 IPR002048 GO:0005509
Lele13g1508 524 Pfam EF-hand domain pair 431 493 IPR002048 GO:0005509
Lele13g1508 524 Pfam EF-hand domain pair 361 420 IPR002048 GO:0005509
Lele13g1508 524 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1508 524 Gene3D - 322 495 - -
Lele13g1508 524 FunFam calcium-dependent protein kinase 13 141 321 - -
Lele13g1508 524 CDD STKc_CAMK 54 312 - -
Lele13g1508 524 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Lele13g1508 524 SUPERFAMILY EF-hand 337 505 IPR011992 -
Lele13g1508 524 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Lele13g1508 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 488 - -
Lele13g1508 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Lele13g1508 524 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1508 524 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Lele13g1508 524 SUPERFAMILY Protein kinase-like (PK-like) 54 322 IPR011009 -
Lele13g1508 524 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Lele13g1508 524 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Lele13g1508 524 SMART efh_1 432 460 IPR002048 GO:0005509
Lele13g1508 524 SMART efh_1 360 388 IPR002048 GO:0005509
Lele13g1508 524 SMART efh_1 396 424 IPR002048 GO:0005509
Lele13g1508 524 SMART efh_1 467 495 IPR002048 GO:0005509
Lele13g1508 524 ProSiteProfiles EF-hand calcium-binding domain profile. 428 462 IPR002048 GO:0005509
Lele13g1508 524 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1508 524 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
Lele13g1508 524 FunFam Calcium-dependent protein kinase 1 57 140 - -
Lele13g1508 524 FunFam Calcium-dependent protein kinase 7 322 496 - -
Lele13g1508 524 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1508 Lele-ChrLele13 24369966 24373569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1508 1 524 EF-hand Containing Proteins AT5G19450 77.401 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele13g1508 Pkinase 1.9e-79 CL0016