Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1506 ATGGCCGACCGTGGTGGGGACCGTGGTGGTTTTGGCCGTGGATTTGGTGGCCGTGGTGGACGCGGTGACCGAGGTCGTGGAGGCCGTCGCAGAGGCGCTGGCCGCCGCGAAGAGGAGGAGAAGTGGGTTCCTGTGACCAAGTTGGGTCGTCTTGTCAAGGAGGGGAAGATTCGCAGCCTTGAGCAGATCTACCTCCATTCTCTACCAATCAAGGAACACCAGATCGTCGATACCCTGGTTGGTCCTAGTCTCAAGGACGAGGTCATGAAAATCATGCCAGTCCAGAAGCAGACCCGGGCCGGTCAAAGGACCCGATTCAAGGCCTTCGTCGTCGTTGGTGACGGCAACGGGCATGTGGGACTAGGTGTGAAGTGTAGCAAGGAGGTCGCCACCGCCATTCGTGGTTCTATTATATTGGCGAAGCTTTCGGTGATTCCGGTAAGAAGAGGTTACTGGGGTAACAAGATCGGGAAGCCTCACACAGTTCCCTGCAAGGTTACCGGAAAATGTGGTTCCGTCACTGTGCGTATGGTGCCTGCCCCTCGTGGTGCTGGAATCGTTGCGGCGAGGGTGCCGAAGAAGGTTTTGCAGTTTGCAGGAATAGAGGATGTATTCACCTCTTCTAGAGGGTCGACTAAGACCCTTGGAAATTTCGTCAAGGCAACTTTTGATTGTTTGCTGAAAACATACGGGTTCCTGACACCTGAGTTCTGGAGGGAGACGCGCTTCACTAAATCTCCATTCCAAGAGTACACCGATATGTTGGCGAAGCCTACAGGAAAGGCCCTAACCCTGGAGGATGAAAGCAGGGTAGAAGCTTGA 822 0.5462 MADRGGDRGGFGRGFGGRGGRGDRGRGGRRRGAGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEYTDMLAKPTGKALTLEDESRVEA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1506 273 FunFam 40S ribosomal protein S2 41 146 - -
Lele13g1506 273 ProSiteProfiles S5 double stranded RNA-binding domain profile. 84 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele13g1506 273 TIGRFAM uS5_euk_arch: ribosomal protein uS5 37 244 IPR005711 GO:0003735|GO:0006412|GO:0015935
Lele13g1506 273 ProSitePatterns Ribosomal protein S5 signature. 101 133 IPR018192 -
Lele13g1506 273 Pfam Ribosomal protein S5, C-terminal domain 168 240 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lele13g1506 273 MobiDBLite consensus disorder prediction 19 39 - -
Lele13g1506 273 Pfam Ribosomal protein S5, N-terminal domain 84 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele13g1506 273 FunFam 40S ribosomal protein S2 147 240 - -
Lele13g1506 273 Gene3D - 147 239 IPR014721 -
Lele13g1506 273 PANTHER RIBOSOMAL S SUBUNIT 33 230 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele13g1506 273 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 240 IPR020568 -
Lele13g1506 273 Gene3D - 41 146 - -
Lele13g1506 273 MobiDBLite consensus disorder prediction 1 39 - -
Lele13g1506 273 SUPERFAMILY dsRNA-binding domain-like 80 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1506 Lele-ChrLele13 24363505 24364958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1506 38 260 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 89.686 8.88e-151 421