Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1474 ATGATGAAGAAAGTTCTCAAGAAAGTGGGAGAGTACAATTTGGCTCCTGGAGTGAAGGAATCTTTGGAAAAATGCATGCCCAGAAGCAAGGTCGTCATGGGTCGCGCAAAACGCGGTATCGATGCCGGACGACACCTCCAGTTTGCAATCACGTCAGTGAAGATGGCGGTAACAAATCGTAAAGCGTCTAGAACTACAGAACATAGATCAGGACAAGGAGAACTTGGAAACCTAATGTTCAAGAGAAACGGCTCTTCAGTTATATCATGGACCGCCACATTCGTTTTAAGGTTACCACACGCGCTTCGTTGCATCGACAAGGCAGGTGGGGCAGGTGGGGTTGATGAAGACTTCCTGAAGGCTCCATATCGCAAGTTGGACACAGAACTTGGCCTCTTTTGGAAAGCCAAGATAGAGAAGCTGTATGAGGAACTTGGGAAGATGGAGGTTGTATTCTTTTCGCCAGAGGATGAACAGAAGTTTGAACAGGGTTTTAAAGAATTGAAAGTGTCTGAAAGGGAAGCAGGGAGGGAATTCCGAAGGAAAATGTATACTGGGATGAACAAACACAAGCAGATTGATCTAGAACATAATGATGAACAATCTACTGATAAAGGAGGTGGTGGAATCGAGGAAGGAATATCACACGAATCTAAACAACAGTTGGCTGCGGTTTCATACGGACTAGCTGCCGACAATCTCGAAGCTGGTAGTTTATTTCTAATCCGACGAGTAAAGAGAGCAATACGACCTGGGCGTGTGAAGATCTCACTTCCCTCCGAAGCTGTCTTCTTTTCCTTTCTAGGCCTTATGGAAGTCGAGGAGGAACAGACCACGTCACCTATTTCTGCAGAAACCTCTGTACCATCGTCTGATGCTCAAAGCATGGCTTCTCCTGTTCCTGCTGTGCTGCCCCCGCCAATGCAACCTGTAATTCCAACAGTCGTTCCACCAGCTAGTGTTCCCCCTATTGCTCCAATTCCTTCAATTCCTCCTCCCACTACTCTCCGCCCACTGGCACCCCTTCCTGTTCGTCCACCATCTATTAGGCCACCCATGTCGCAAAATGGTGAGGCTAGATCAACAGACTCTGATTCAGATCATGATGACTTAGCCCCTGGGATAAACAAGGGTACAGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTAAGAGAGAGGCAGGAAAAGGCAATGCAGGAACTTATGATGAAGAGGCGTGCTGCTGCTCTGGCTGTTCCAACAAATGACATGGCTGTGCGAGCTCGTCTCCGGCGTCTTGGTGAACCCATCACTCTTTTTGGTGAAAGGGAGATGGAGAGAAGGGACAGGTTGCGGATGATTATGGCAAAGTTGGATGCTGAAGGTCAACTGGTAAAGCTGATGGAAGCTCATGAAGATGAAGAGGCAGTTGCTTCTGCTGCAAAAGAAGAGGCTGAGGAAGACCTACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGGTGCCAGAGTTGATATTGCTAAGTTTTCTTTAGTAAGAGCAGCAACACGTCTTAATCGTGCTCGAAGAAGAAGAGATGATCCAGATGAAGATATAGATGCTGAAATAGATTGGGCACTCAAGCAGGCAGAGAACTTGGTTCTTGATTGCAGTGAGATCGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCGGCAGATGGAAAATGCCTTGCTACCTGTTCTCTGACTGGAGCTGTGAAACTTTGGAGCATGCCTGAAGTTAAAAAAAATTCTACCTTAAAGGGGCACACAGAGCGTGCTACTGATGTTGTTTACTCTCCTGTGCATAACCATATAGCAACTGCCTCTGCTGACCGCACTGCAAGGTATTGGAATGATCAAGGGTCTCTTTTAAAGACATTTGAGGGTCATCTTGACCGTCTTGCTCGCATTTCCTTCCATCCATCTGGGAAGTACTTGGGCACTGCTAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGCGAGGAGTTGCTTCTCCAAGAAGGTCATAGTAGGAGTGTATATGGTTTAGCTTTCCACCATGATGGATCATTAGCAGCATCTTGTGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGTACTGGGAGAAGTATTCTTGCACTAGAAGGTCATGTCAAACCGGTTCTTGGCGTCAGTTTTTCACCTAATGGTTATCATTTAGCCACAGGTGGTGAAGACAACACCTGTCGCATTTGGGATTTGAGAAAGAAAAAATCCTTGTACATCATTCCAGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACAAGAGGGTTATTTTTTGGTAACAGCTTCGTATGATATGACAGCTAAGGTATGGTCAGCTCGTGATTTCAAGCCTGTCAAAACGTTATCTGGGCATGAAGCAAAAGTTACTTCTCTAGATGTTCTTGGAGATGGACGGTATATTGCTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAACATGGCTAGCGAACAAGCTATGGATGTTGACTGA 2535 0.4627 MMKKVLKKVGEYNLAPGVKESLEKCMPRSKVVMGRAKRGIDAGRHLQFAITSVKMAVTNRKASRTTEHRSGQGELGNLMFKRNGSSVISWTATFVLRLPHALRCIDKAGGAGGVDEDFLKAPYRKLDTELGLFWKAKIEKLYEELGKMEVVFFSPEDEQKFEQGFKELKVSEREAGREFRRKMYTGMNKHKQIDLEHNDEQSTDKGGGGIEEGISHESKQQLAAVSYGLAADNLEAGSLFLIRRVKRAIRPGRVKISLPSEAVFFSFLGLMEVEEEQTTSPISAETSVPSSDAQSMASPVPAVLPPPMQPVIPTVVPPASVPPIAPIPSIPPPTTLRPLAPLPVRPPSIRPPMSQNGEARSTDSDSDHDDLAPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLVKLMEAHEDEEAVASAAKEEAEEDLQYPFYTEGSKALLGARVDIAKFSLVRAATRLNRARRRRDDPDEDIDAEIDWALKQAENLVLDCSEIGDDRPLSGCSFSADGKCLATCSLTGAVKLWSMPEVKKNSTLKGHTERATDVVYSPVHNHIATASADRTARYWNDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDGRYIATVSHDRTIKLWSSNMASEQAMDVD 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1474 844 MobiDBLite consensus disorder prediction 278 297 - -
Lele13g1474 844 Pfam WD domain, G-beta repeat 674 705 IPR001680 GO:0005515
Lele13g1474 844 Pfam WD domain, G-beta repeat 795 832 IPR001680 GO:0005515
Lele13g1474 844 Pfam WD domain, G-beta repeat 713 747 IPR001680 GO:0005515
Lele13g1474 844 Pfam WD domain, G-beta repeat 625 663 IPR001680 GO:0005515
Lele13g1474 844 Pfam WD domain, G-beta repeat 588 622 IPR001680 GO:0005515
Lele13g1474 844 PANTHER WD40 REPEAT PROTEIN 364 833 - -
Lele13g1474 844 MobiDBLite consensus disorder prediction 193 212 - -
Lele13g1474 844 Gene3D - 718 842 IPR015943 GO:0005515
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 672 IPR001680 GO:0005515
Lele13g1474 844 Pfam pre-mRNA processing factor 4 (PRP4) like 420 446 IPR014906 -
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 673 710 - -
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 757 790 - -
Lele13g1474 844 ProSitePatterns Trp-Asp (WD) repeats signature. 650 664 IPR019775 -
Lele13g1474 844 CDD WD40 554 832 - -
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 757 799 IPR001680 GO:0005515
Lele13g1474 844 MobiDBLite consensus disorder prediction 330 390 - -
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 590 622 - -
Lele13g1474 844 SUPERFAMILY PRP4-like 398 453 IPR036285 -
Lele13g1474 844 SMART pr04_2 415 468 IPR014906 -
Lele13g1474 844 MobiDBLite consensus disorder prediction 278 298 - -
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 631 668 - -
Lele13g1474 844 Gene3D - 391 458 IPR036285 -
Lele13g1474 844 SUPERFAMILY WD40 repeat-like 547 831 IPR036322 GO:0005515
Lele13g1474 844 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 530 714 - -
Lele13g1474 844 SMART WD40_4 624 663 IPR001680 GO:0005515
Lele13g1474 844 SMART WD40_4 708 747 IPR001680 GO:0005515
Lele13g1474 844 SMART WD40_4 539 580 IPR001680 GO:0005515
Lele13g1474 844 SMART WD40_4 583 622 IPR001680 GO:0005515
Lele13g1474 844 SMART WD40_4 666 705 IPR001680 GO:0005515
Lele13g1474 844 SMART WD40_4 793 832 IPR001680 GO:0005515
Lele13g1474 844 SMART WD40_4 750 790 IPR001680 GO:0005515
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 715 749 - -
Lele13g1474 844 ProSitePatterns Trp-Asp (WD) repeats signature. 692 706 IPR019775 -
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 800 832 IPR001680 GO:0005515
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 715 756 IPR001680 GO:0005515
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 800 832 - -
Lele13g1474 844 MobiDBLite consensus disorder prediction 193 215 - -
Lele13g1474 844 PRINTS G protein beta WD-40 repeat signature 734 748 IPR020472 -
Lele13g1474 844 PRINTS G protein beta WD-40 repeat signature 650 664 IPR020472 -
Lele13g1474 844 PRINTS G protein beta WD-40 repeat signature 819 833 IPR020472 -
Lele13g1474 844 MobiDBLite consensus disorder prediction 330 350 - -
Lele13g1474 844 Coils Coil 458 482 - -
Lele13g1474 844 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 758 834 - -
Lele13g1474 844 Gene3D - 549 717 IPR015943 GO:0005515
Lele13g1474 844 ProSitePatterns Trp-Asp (WD) repeats signature. 734 748 IPR019775 -
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 714 IPR001680 GO:0005515
Lele13g1474 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 622 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1474 Lele-ChrLele13 24174241 24181335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1474 635 831 U-box Gene Family AT2G33340 23.982 2.04e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1474 13 24174241 24181335 Lele15g0952 15 5543393 5550662 hybridization
Lele13g1474 13 24174241 24181335 Lele16g0972 16 5511224 5515602 hybridization