Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1432 ATGGTTGGTCTGGTCCGTGAACCTCTCAACCCCTACGATGAAAACGCCATTAAGGTCCTCAGCACTCGAGAAACTCAGGTTGGGCATATTGAGCGCTCCGTCGCTGCCGTACTGTCTCCCTTGATAGACTCCGAACTTATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCCGGTAACAAGTTCAAGATTCCTTGTCAAATTCATATATTTGCGACAATTGAGGCTTTTCCAACGGTGCAAGGTGTGATTTCAGAAGAGAAAGATGGAGGCTTTGTGAATGTTTTGACCAATTATCATACGGACACAAGGCCGGAGCCTTTGCGAGGTGGTATTCTAGCAGGTGATATGGGATTAGGCAAGACCTTAACTTTACTTTCTTTAATTGCTCTTGATAAGAATTCTATTGCTTTAAATATGGAAGAAGGAAAGCATGATGAAGGATTCGCTGTCTCAAGCGGTAAGAAGGGTAAGAGGAGAAGAACAAATAAACAGACCACTGGATCAGAAAAAAGACGCAAGACTGAGAATACTTCTTCAAACATGACCAAGGATGCTGAAGAACTTAAGATGTGTGATTTAGTATTAACCACTTACACGACTTTAGCTACTGAAGAGTCTTCTACAGACTCACCCATTAGAGTGGTGGAGGAATTGCCTCCAAAAACTGTAGAGACTAGTTTCGTTGAACTTCTTGAGGAAGAACGGAAAATGTATGATCAGATAGAGTCAAGAGCAAAGAACATCGTGGCAGATGTTTCCAATAACCCGGAATTGCTGCAGAAGTTGGGAGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATATGTATTTCTCCACCAACTGACATTGTAATTACATGCTGTGCTCACATATTCTGCCAAGCTTGTATTCTGCAACCCCTACAGCGGAGCAGAGCCTGTTGTCCCCTTTGTCGTCATCCCCTCAAAGAATTTGACTTGCTCTCCGGCCCACCTCAATCTTCTGATGCTGATGATTCTGGACTCTCCGCGGACAAAACAAGCATATCCTCTAAGGTGTCTGCTCTGGTGAAACTTCTTGTTTCCTCAAGGGATCAACATGCAGCTGCAAAATCAGTTGTGCTTTCTCAATTTCGTAAGATGCTGATTTTACTGGAACAGCCTCTGAAAGCAGCTGGTTTCAAGACAGTGCGCCTTGACGGGACCATGAATACTAAACGGAGGGTTCGAGTTATGGAAGAATTTGCAGCTGGAGGAACAGATGAACCCATGGTTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAAGCAATGGATCGCGTGCACTGCACTGGAAAGAAAGGAGGAGGTGAAGATTGTAAGATTGATTGCTAA 1428 0.4475 MVGLVREPLNPYDENAIKVLSTRETQVGHIERSVAAVLSPLIDSELIIVEGIVPKTYSGNKFKIPCQIHIFATIEAFPTVQGVISEEKDGGFVNVLTNYHTDTRPEPLRGGILAGDMGLGKTLTLLSLIALDKNSIALNMEEGKHDEGFAVSSGKKGKRRRTNKQTTGSEKRRKTENTSSNMTKDAEELKMCDLVLTTYTTLATEESSTDSPIRVVEELPPKTVETSFVELLEEERKMYDQIESRAKNIVADVSNNPELLQKLGEVLQDGEDFDCPICISPPTDIVITCCAHIFCQACILQPLQRSRACCPLCRHPLKEFDLLSGPPQSSDADDSGLSADKTSISSKVSALVKLLVSSRDQHAAAKSVVLSQFRKMLILLEQPLKAAGFKTVRLDGTMNTKRRVRVMEEFAAGGTDEPMVLLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHCTGKKGGGEDCKIDC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1432 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 332 IPR013083 -
Lele13g1432 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 475 IPR001650 -
Lele13g1432 475 SUPERFAMILY RING/U-box 267 320 - -
Lele13g1432 475 MobiDBLite consensus disorder prediction 168 184 - -
Lele13g1432 475 MobiDBLite consensus disorder prediction 147 184 - -
Lele13g1432 475 Pfam Helicase conserved C-terminal domain 347 460 IPR001650 -
Lele13g1432 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 465 IPR027417 -
Lele13g1432 475 Gene3D - 335 473 IPR027417 -
Lele13g1432 475 SMART ring_2 275 313 IPR001841 -
Lele13g1432 475 CDD SF2_C_SNF 344 460 - -
Lele13g1432 475 Pfam HIRAN domain 2 58 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lele13g1432 475 Pfam SNF2-related domain 99 161 IPR000330 GO:0005524|GO:0140658
Lele13g1432 475 Pfam Zinc finger, C3HC4 type (RING finger) 275 313 IPR018957 GO:0046872
Lele13g1432 475 Gene3D - 1 88 - -
Lele13g1432 475 ProSiteProfiles Zinc finger RING-type profile. 275 314 IPR001841 -
Lele13g1432 475 Coils Coil 232 252 - -
Lele13g1432 475 ProSitePatterns Zinc finger RING-type signature. 290 299 IPR017907 -
Lele13g1432 475 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 6 206 - -
Lele13g1432 475 SMART helicmild6 378 463 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1432 Lele-ChrLele13 23890862 23894422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1432 1 93 RAD5 or RAD16-like Gene Family AT5G05130 65.957 3.10e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele13g1432 SNF2_N 4.8e-08 CL0023