Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1430 ATGAAGTCCGGGTCACTAGAATACTGGAGGAATTACTTCCGGACTGCAACTTCTGATATATTCGATATAATTGACCACGCGATCATGGTGGCGGTTTCCGATTGTCCGAAGGAATTTAGATTACGAAGAGACGGAATTGCGGAGCGTTTGTTTTCCTGTAGATTGACTCGTTGTTTGGGGTGTGATCGATTAGAGTTGGCGGTTTCCGGTGATGATGAGGAAGATGGAGGTTGTAAGAGTGGTTTTGATCGACAAGCTACTGAATTAGAAGCAGGAGCTAGTAAAGAGAGCAAGGTCAATGGTAGCAGAGACGATCATGGGGCGATGAACAGGAACCAAGTGAGTAATTTTAGTTTTGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGATGGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCCATAACAGCAAGGAAGAGCCTGATTCAGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGCTGGCACTGACCGTGGATCTTCTCAAGGGAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAGCACGGATCAAAGGAGATCCGTCAACTTGCACGAACTCTTATCGATGGCTGGAAAGAAATGGTAGATGAATGGGTCAAGTCCACAGCAGCTATAGCAGGTTCAGTTGAAGGCACCCCAGATTCATTTAATCCATCAGTCGTTGATGAAGAGGAAGGGCTTCCTTCGCCTCCTATGGATGAAGGGGCTTTTCTTGCAGCTCCGCCCGGCCCAATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATTTTCGACAAAGTGGGGAATTCATCAAGACTCGTGAACACATCAGAAAACCATCTATGGACAATCAAAACGTAGCAAAGAGAAAACCACAGGCTTCCAGTGAGGCCAAGGAGAGCAAATGTCATCAAATGAAGAAAAATGAGGTTGCTATGAGACAGAGTAAACCGGTCTGCCCTGATTCTGGCTCGGACAGGCCACCAAAATCCAGCTTGCAGCAAAAAAGCAACACGGGAACAAAGATGCAGCAGAAACAACAGAAGAGTGCTATCCCAAAGAGGCCTCTTGTTGCTCAGCAAGATAAATTCAAGGGTTCAGATGATGTTTCAGTCCAAGTAAAATTAGAAGCCACTAAGAGGAAACTTCAGGAGTCTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGGACAATACAGGTTATGGAGTTGCACGATCTTCCAAAGCAAGGGAATGGCCACCGAAATCCACACTTCAAGCCTGGGAACCTCAACAAGCACTGGGCTCACGGACGAAGATAG 1332 0.4617 MKSGSLEYWRNYFRTATSDIFDIIDHAIMVAVSDCPKEFRLRRDGIAERLFSCRLTRCLGCDRLELAVSGDDEEDGGCKSGFDRQATELEAGASKESKVNGSRDDHGAMNRNQVSNFSFGEAEALTDEIEEESQMVGEVLRIKEILHNSKEEPDSVLFESLRRLQLLALTVDLLKGTEIGKAVNPLRKHGSKEIRQLARTLIDGWKEMVDEWVKSTAAIAGSVEGTPDSFNPSVVDEEEGLPSPPMDEGAFLAAPPGPMELSQFFDGMDDDGNFRQSGEFIKTREHIRKPSMDNQNVAKRKPQASSEAKESKCHQMKKNEVAMRQSKPVCPDSGSDRPPKSSLQQKSNTGTKMQQKQQKSAIPKRPLVAQQDKFKGSDDVSVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGNGHRNPHFKPGNLNKHWAHGRR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1430 443 Pfam TFIIS helical bundle-like domain 161 209 IPR017923 -
Lele13g1430 443 Coils Coil 383 410 - -
Lele13g1430 443 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 220 IPR035441 -
Lele13g1430 443 CDD TFIIS_I 138 210 - -
Lele13g1430 443 MobiDBLite consensus disorder prediction 89 111 - -
Lele13g1430 443 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 431 IPR044805 -
Lele13g1430 443 MobiDBLite consensus disorder prediction 224 243 - -
Lele13g1430 443 SMART TFS2_5 136 211 IPR003617 GO:0005634
Lele13g1430 443 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 127 220 IPR035441 -
Lele13g1430 443 MobiDBLite consensus disorder prediction 303 321 - -
Lele13g1430 443 MobiDBLite consensus disorder prediction 417 443 - -
Lele13g1430 443 MobiDBLite consensus disorder prediction 337 361 - -
Lele13g1430 443 MobiDBLite consensus disorder prediction 282 380 - -
Lele13g1430 443 ProSiteProfiles TFIIS N-terminal domain profile. 137 212 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1430 Lele-ChrLele13 23871954 23874757 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele13g1430 Med26 4.9e-12 No_clan