Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1401 ATGGGGAGGAAGCGAAAGCTCACGCCAAAACCTGCTGAATCCGTTGAGCCCCCATTGAAGCAACAGCATCAACAACAGGAGCAGCAGCAATATGAGCCAGAAGCGGACCAAAGTGTTGAAGACCAAGATAATGGAGCCGATTACGAAGAAGTTGAAGTGGAGGAGGAGGAGGAGGAGGTAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGATGAACAAGAACCAGGAGAAGGATCCGGAGACGATAACGCTAATCCCGACGACGCTCAAGATGCGAATGATCAGGCATTTAAGGCCCTGACAACATCAGCGGCTGCAACATCAGTAACCGGTCAATATGGAAAGGATGACAACGACGAAGAGCCGATACATAAGCTTCTCGAACCGTTCGGTAAGGAACAAATTTTAAATCTTCTGTGCGAAGCGGCGAATAACCATCGCGATGTAGCGGATCGGGTCCGAAAGGTGGCTGACGAGGACCCCGCTCATCGAAAAATCTTCGTGCACGGCCTCGGATGGGACACAAACGCTGATACCCTCATCAACGTTTTCAAGCAGTACGGTGAAATTGAAGATTGTAAGGCGGTATGTGACAAGGTATCCGGTAAATCCAAGGGTTATGGCTTCATCCTCTTTAAATCGCGTCGTGGAGCTCGCAATGCGCTGAAGCAACCGCAGAAGAAGATCGGGAACCGAATGACGGCCTGTCAGCTTGCCTCGGTTGGTCCGGTTCAACAGCCGGTCGCTACACAATCAACTCCAGCACAACCGGCATCAGAGTATACCCAAAGGAAGATTTACGTCAGCAATGTTGGGGCCGATTTGGATCCTCAGAAATTGCATGTGTTTTTTTCGAAGTTTGGGGAGATCGAGGAAGGACCATTAGGGCTTGATAAGCTGACTGGGAAACCCAAAGGGTTCTGCTTGTTTGTGTACAAGAGCGTGGAGAGTGCCAGAAAGGCTCTAGAAGAGCCTCACAAGGAATTTGAGGGCCATATTTTGCACTGTCAAAGAGCAATAGATGGCCCGAAGCCGGGAAAGCCTCAATTTCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAATGAGACCACAACATATGTGGGTGGGGCTGCTACCGGACAAGGGCACCTGATGGCGCCAGCGGGACCTGGCATTGGATTTAACCCGCAGGCTGCGGCTGCACAGACACTAAACCCAGCTCTTGGGCAGGCACTGACAGCACTACTTGCAACTCAAGGGGCTGGCCTGGGGCTGACCAATTTATTGGGAACTCTGGGATCAGCTGGTACAGTAAACCCAGCTGTTCCTTCTGCAGGCCATGGAATGCAAGGTGGTTACAGTAACCAACCTAATATAAGCTCGGGTGTAATTGGTGGATATGGAAATCAAAGTGGCTTACAGGGCGCATATCCAAATCAGCAGGTGGGACAAAGTGGTTCTGGAAGAGGGCAGCATGGTGTTGGCCAATATGGTGGTGTTGCCCCTTACATGGGGCACTAG 1509 0.5103 MGRKRKLTPKPAESVEPPLKQQHQQQEQQQYEPEADQSVEDQDNGADYEEVEVEEEEEEVEEEEEEEEEEDEQEPGEGSGDDNANPDDAQDANDQAFKALTTSAAATSVTGQYGKDDNDEEPIHKLLEPFGKEQILNLLCEAANNHRDVADRVRKVADEDPAHRKIFVHGLGWDTNADTLINVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASVGPVQQPVATQSTPAQPASEYTQRKIYVSNVGADLDPQKLHVFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVESARKALEEPHKEFEGHILHCQRAIDGPKPGKPQFQQHQNPQRTQFQRNETTTYVGGAATGQGHLMAPAGPGIGFNPQAAAAQTLNPALGQALTALLATQGAGLGLTNLLGTLGSAGTVNPAVPSAGHGMQGGYSNQPNISSGVIGGYGNQSGLQGAYPNQQVGQSGSGRGQHGVGQYGGVAPYMGH 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1401 502 MobiDBLite consensus disorder prediction 18 33 - -
Lele13g1401 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 334 IPR000504 GO:0003723
Lele13g1401 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 232 IPR000504 GO:0003723
Lele13g1401 502 MobiDBLite consensus disorder prediction 34 78 - -
Lele13g1401 502 MobiDBLite consensus disorder prediction 1 91 - -
Lele13g1401 502 Gene3D - 155 242 IPR012677 -
Lele13g1401 502 Gene3D - 243 378 IPR012677 -
Lele13g1401 502 SMART rrm1_1 265 337 IPR000504 GO:0003723
Lele13g1401 502 SMART rrm1_1 165 237 IPR000504 GO:0003723
Lele13g1401 502 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 346 - -
Lele13g1401 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 340 IPR000504 GO:0003723
Lele13g1401 502 SUPERFAMILY RNA-binding domain, RBD 246 360 IPR035979 GO:0003676
Lele13g1401 502 MobiDBLite consensus disorder prediction 471 487 - -
Lele13g1401 502 SUPERFAMILY RNA-binding domain, RBD 156 246 IPR035979 GO:0003676
Lele13g1401 502 MobiDBLite consensus disorder prediction 341 360 - -
Lele13g1401 502 CDD RRM_RBM24_RBM38_like 164 239 - -
Lele13g1401 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 241 IPR000504 GO:0003723
Lele13g1401 502 MobiDBLite consensus disorder prediction 471 494 - -
Lele13g1401 502 Coils Coil 46 74 - -
Lele13g1401 502 CDD RRM_RBM24_RBM38_like 264 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1401 Lele-ChrLele13 23682794 23684302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1401 263 381 C2H2 Transcription Factor Family AT2G19380 33.884 8.34e-12 65.9