Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1386 ATGAGTTCACAAAACTTCAACAATGGGGGTGATAGTTTTTGTGGGGACGCCAATCTTTTACCCCAAGTTCCTTCTTATGTATCCCCTCTTCGAGTTCGAAGTCCGCAACTTTCACGGTCAAAAACTTTTGGCCATACTGGTGGCGAGATTGGTTTTCAGATTCTGAGCCATTCATTTGTGCCCCAAGAGAACAGGGGAACAATGAGAGGAGACGGTGAAGCTGATGGACCCTCAAGGGCTCAGAACAGGAGCTTGCCTTTCAAACTCGGCGAGGAGGACATCGAAGCTAAGAGCTCTTCTGGGTTGAGAAATGGACACACCAAGCTCTGTGCTAGAGGCCACTGGAGGCCAGCTGAAGATGCCCGACTCAGAGAGCTCGTAGCTCAGTTCGGTCCTCAAAATTGGAACATGATCGCCGACCACCTCCAAGGAAGATCAGGTAAAAGCTGCAGACTGAGGTGGTTCAATCAGCTTGATCCCAGAATTAACAGGAGGGCGTTCTCCGAGGAAGAAGAAGCGAGATTATTGTCCGCTCATAGAATGTACGGGAACAAATGGGCCATGATAGCGAAATTGTTTCCTGGGAGGACAGATAATGCAGTTAAGAACCACTGGCACGTGATAATGGCCAGGAAGCACAGAGAGCAAGCGAATGGTTGTAGGAGGAGGAGATCTTCTTCCGAAATCATGCGTCCACAGGCTCTAAATTTATCTCTCTCAAATAATGCAGCGAGCGAATCCACCAACTGCAGCAACCCCATAGATGAATATGCCTCATCCTCCACCGATCTCTCCCTCAGCCCCGCATTTTTCCCAAACCCGAGTCCCCAAATGGGTCTGTCCAGTGAGACGAAGTTGAAAAGTGGGGACGTGGGATTCGACAGATTGTTCGTGGGTTGGAAGGAATGGATCGAGGGAGGAGTACGAATGGGGAAGGGGATGATGGGTGGAGTGGAGCAATCAAAATCAAATTCAGAGTCAAACTCAGGAATATCAGTATCTGAGTCAGTGGCCACCAACAGGACAAACCTCTCAATTTCTGGGGAAAGTGAGAACGTGGGCGATAACATGAACATGCCATTCATTGATTTCCTTGGAGTAGGAGCTACATGA 1113 0.4897 MSSQNFNNGGDSFCGDANLLPQVPSYVSPLRVRSPQLSRSKTFGHTGGEIGFQILSHSFVPQENRGTMRGDGEADGPSRAQNRSLPFKLGEEDIEAKSSSGLRNGHTKLCARGHWRPAEDARLRELVAQFGPQNWNMIADHLQGRSGKSCRLRWFNQLDPRINRRAFSEEEEARLLSAHRMYGNKWAMIAKLFPGRTDNAVKNHWHVIMARKHREQANGCRRRRSSSEIMRPQALNLSLSNNAASESTNCSNPIDEYASSSTDLSLSPAFFPNPSPQMGLSSETKLKSGDVGFDRLFVGWKEWIEGGVRMGKGMMGGVEQSKSNSESNSGISVSESVATNRTNLSISGESENVGDNMNMPFIDFLGVGAT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1386 370 PANTHER MYB PROTEIN-RELATED 112 255 - -
Lele13g1386 370 SUPERFAMILY Homeodomain-like 112 205 IPR009057 -
Lele13g1386 370 ProSiteProfiles Myb-like domain profile. 159 209 IPR001005 -
Lele13g1386 370 Pfam Myb-like DNA-binding domain 112 158 IPR001005 -
Lele13g1386 370 Pfam Myb-like DNA-binding domain 164 207 IPR001005 -
Lele13g1386 370 Gene3D - 112 163 - -
Lele13g1386 370 CDD SANT 166 206 IPR001005 -
Lele13g1386 370 CDD SANT 115 156 IPR001005 -
Lele13g1386 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 158 IPR017930 -
Lele13g1386 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 213 IPR017930 -
Lele13g1386 370 SMART sant 111 160 IPR001005 -
Lele13g1386 370 SMART sant 163 211 IPR001005 -
Lele13g1386 370 MobiDBLite consensus disorder prediction 63 89 - -
Lele13g1386 370 ProSiteProfiles Myb-like domain profile. 112 158 IPR001005 -
Lele13g1386 370 FunFam MYB transcription factor 112 163 - -
Lele13g1386 370 Gene3D - 165 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1386 Lele-ChrLele13 23605955 23607307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1386 111 370 MYB Transcription Factor Family AT1G69560 44.161 3.81e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele13g1386 Myb_DNA-binding 5.5e-14 CL0123