Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1372 ATGTTGTGGGTAGACAAGTATCGACCCAAAACCCTCGACCACATTGTTGTCCACGAAGAAGTCGCCCAAAATCTTAAGAAACTGGTGACGGAGCAGGATTGCCCGCATTTGCTGTTCTATGGCCCGCCTGGGTCTGGCAAAAAAACCCTAATCATGGCTCTTCTCCGACAAATGTTTGGAAACGGTACCGAGAAGGCGAAGGTGGAAAATAAGACCTGGAAAGTGGATGCTGGGAGTAGATCTATTGATATAGAGCTGACAACATTATCAAGTGCCAATCACATCGAACTGAGTCCCAGTGATGCAGGCTTTCAGGACAGATATATTGTTCAAGAAATAATCAAAGACATGGCTAAAAATAGACCACCAATTGATACCAAGGGGAAGAAAGGATTTAAAGTTATAGTGCTCAATGAGGTTGACAAACTCTCTAGAGAAGCCCAGCATTCTCTGCGTAGAACAATGGAAAAATACAGTTCTTCTTGCAGGTTGATTCTATGTTGCAATAGTTCTTCAAGAGTTACAGAAGCAATCCGCTCTCGTTGTCTAAATGTGCGAATAAATGCACCAAGTGAAGAGCAGATAGCTAGAGCATTGGAGTTCATTGGTAAGAAAGAAGGCCTGCAACTTCCTCCTGGGTTCACAGCTCGCATTGCAGAGAAATCAAATCGGAACCTAAGGCGGGCTATATTGTCTTTTGAAACTTGCCGTGTTCAACAGTATCCTTTCAGTAGCAAGCAAACGATACCGCAAATGGATTGGGAGGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAAAGCCCGAAAAGGTTGTTTCAAGTTCGAGGGAAGTTGTATGAGCTCTTAATCAACTGTATACCTCCTGAGATCATTTTGAAGAGGCTTCTTTACGAACTGTTAAAGAAACTGGATGCAGAATTAAAGCTTGAGGTCTGCCATTGGGCCGCATATTATTTTGTCCAGCCATTTTACAGTACTGTTTCCTCTTATTCTTCGCCCTCATTGGACCAGGAACATAGAATGCGCCTTGGACAGAAGGCCATCTTCCACATCGAAGCATTTGTGGCAAAATTCATGAGCGTTTATAAAGCCTTCCTAATTGCAACATTTGGCTGA 1125 0.4276 MLWVDKYRPKTLDHIVVHEEVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQMFGNGTEKAKVENKTWKVDAGSRSIDIELTTLSSANHIELSPSDAGFQDRYIVQEIIKDMAKNRPPIDTKGKKGFKVIVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIARALEFIGKKEGLQLPPGFTARIAEKSNRNLRRAILSFETCRVQQYPFSSKQTIPQMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLKKLDAELKLEVCHWAAYYFVQPFYSTVSSYSSPSLDQEHRMRLGQKAIFHIEAFVAKFMSVYKAFLIATFG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1372 374 CDD AAA 16 191 - -
Lele13g1372 374 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 321 - -
Lele13g1372 374 Gene3D - 191 249 - -
Lele13g1372 374 Gene3D - 253 365 - -
Lele13g1372 374 FunFam replication factor C subunit 3 191 249 - -
Lele13g1372 374 CDD HLD_clamp_RFC 190 258 - -
Lele13g1372 374 SUPERFAMILY post-AAA+ oligomerization domain-like 252 366 IPR008921 GO:0003677|GO:0006260
Lele13g1372 374 FunFam Replication factor C subunit 5 1 190 - -
Lele13g1372 374 SMART AAA_5 33 193 IPR003593 -
Lele13g1372 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Lele13g1372 374 Pfam DNA polymerase III, delta subunit 18 189 - -
Lele13g1372 374 Gene3D - 1 190 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1372 Lele-ChrLele13 23526611 23530007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1372 1 374 Core DNA Replication Machinery Family AT5G27740 78.610 0.0 627