Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1349 ATGAGTTATCCAGTCTTCAAAGAATATACTCTATCGCCTCGTCAAAATGGCACGTTGGAGGTCTGTTTCGATAAGCAGGTCTCCTATGGATCTGGTTATTGGCTGGAAAATTCCTTACAGGTCACCATGCCTCTGTTTGCTCTGCAACTCGCTATAATTCTATCATTCAATCGTCTCTTCATCCTTGCCTCAGAACCATGGCACTTGCCTCGTATTGTCACTGATGGTTTTGCTGGGTTCTTGACTAGTCCCGCTGTTCTGGGACGTTCTACTTTTTTTATCAATCACATATTCACTTTCAGTAGTATGATGGCATTGGAAACCGTGGCAGCTTTGACCCTTGTTTACTATATGTTCTTGATCGGCTTAGAGTTTGATTTGAAGCCAATAAGGCGTTCCGGGAACAAGAAGGCTATAATTGTCGCCATTGCTGGTGTAATCTTCTCTATTCCTTCTGGGATTGGATTGTACTACCTACTTCTCTCTGACTTGGGACGCAACAACATGCCTCCTACAACAACTGGAACGAGACATTTCACCGGTGCTATGTTATGGGGAATGGCCCTTTCTTGCAGCGAGTTCCCTGAGATTGCGAGGATTCTCACTAGCCTCAAGCTTGTTCTCAACGATAATGGACAATTGGCTTTAACCTCTGCTCTCATCAATGACGTCTTCTCTTGGATCTTCCTTGTAATATCAATATCAGCACTCCATGCAGCTTCAGGAGCATCCATAGCCTCCACCTTAGTCTTTCTGTTAATAGGTGTCTATGTGGTTCATCCTCTTGCTAAGTGGCTCTTCCAGAAGGTTGACACAAAGGACAGAGATTTGATTGACGCGCAAGTTGTATTTCTCTTGCATATGATTTTGCTCTTTGGGTTCCTCGCCGATGGAATGGGAGCTCATTCCATCACAGGGGCCTACGTTTTAGGAGCTATTACTCCAAAGGGTATAATCTCAAAGGCGGTTCAGGAAAAAGTGCTTGATTTTGTGACAGCATTCATGATGCCAGTTTTCTTTGCGGTTCTTGCGCAGAGAATCCATGTCCAAGACTTTGCCTGGGGAATCCATTGGACAAGTGTTGTGGTGATTGTTTTGCTGGCTTTCATGGCCAAGATTTTGTCCACTCTCGCTGTCTATCTGCTCTACAGGTTGCCTCTCAAGGAAGGCTTCTCTATTGGAGTAGTCATGAATACCAAAGGAATTGTGTCAATCATCATTCTTACCACCGGCAGGGACATGCTGGCACTGAACGACCAAACCTTTGGGGTAATGCTTTTGATATGCTGGATAATGACGATTCCCGTGGGGCCTGTCTTAGCCGCCATAAGCAAATTCACGAGTTCCAATAGTGGGAATAGCCAACGTAGGACCATGCAAGGGGCAAAACCGGACATGCCGATCAGAGTGCTGGCCTGTGTCCACACATCACGCGACGCCAATGTGATTACCAATCTGTTGAAAGCATCGAATCCAACTGTTAAAGCCCCGATCCAGGTTTTTGCGACAGAGCTTGTGAAGATGACAAGCCGCCCCACCACAGCACTAATCCTAGATGATGCTAATAAGCAAGTAATGGAATCCAAATCTAAGAAAGATCTCTTGCGAGGTCTCAATCAAGACGGAAACATCACAGAGACAGAGGATACGCTTGCGTGCTTTGAAAATCTTAGCCAAGCTATATTCGCTGAGAAGTTAAGGGTCGTGTCAGATTACAACACCATGCACAAAGACATCTTCCATTTAGCGAAGCAAAGAGGAGTGACACTCATACTAACCACACTTTACAAACAACCGACATACGATGGTTTAGGTGCAGGCACAGCCACAGCCAGAGCTGCTAACATTGTGAACAGAGAATCTTCAAGCAAGGATAAGAAAAAAGTGGTGCTTGAGAACCTAGTGAAGGAACCACCATGTTGTTTGGGGATATTCATAGATCGTGGGTTTGGTCAAAAGCGAGGCAAAGAGCAGAAATTGGCAATGTTCTACGTGGGTGGAGCAGATGACCGTGAAGCATTGTCGTACGCGGGGAGGATGTGTAGGAGCCCAAACACGAAATTAACAGTGGTAAGGATTATTTGGGACAACCCTAGCGAGGAATTTGATCAAACAGATGAAGAGTACCTGAGAATTTTCAAATTCCAAACGAGGGACATGAGGGGATCGGTGAAGTATTTAGAGAAAGTGGTGAGAGACGAGAAGGAGACGGTGGCGTTGCTGAACACTGTGGGAGAAAATGGGTATGATTTGTACATAGCAGGGAGAGGACAAGGGAGGAAGATGTCGTTGGCACAAACGCTTGACCCTGTTCTGGACGAGCCGGCGTTGGGACCACTCGGCGATACATTGGCGGATTTGAATTCTGCCGCGGAGACGTCGATTTTGATATTGCAGACTCAAGCTAGCGGTGATGGGAATGCCGAGCCTGCGCCGTCCGAGTATGCTTATTTTGAAGGACATGGCGATCTAATGCTACGTGGAGGCCATATGACATGGCGAGCTTCTGAGTTGAATGGACTTACCAAGGATTACAGTTTAGTAAAAGGTATTGATTTTACTATTTTTACACAGGAATCGTTTGAAATCCCACGTGGGCCTGGAAATGGGGACGTGGAGTTAGGCTCATATTTACGGACTTCAGGAGAACTGGGTTTGGATACTTTCTTCAAAAAGGTTCAAGAGCTCGATAAACAGTTTGAGAGGCTGGGTAAGCTTCTCAGACAGCTCCAGGATGCTCATGAGGAGTCAAAAGCAGTTACCAAAGCTCCTGCCATGAAGGGTATTAAGCAGAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAATTGCCCATCACATAAAAACAAGAATTGAAGAATTGGACAGAGAAAACTTGGAAAATAGGCAAAAGCGTGGGTGTGGAAAAGGATCGGGTATCGACAGGTCAAGAACAGCAACCACCACTGCCTTGAAAAAGAAATTGAAGGACAAGATGGATGAATTTCAGAGGCTTAGGGAAGTCATGCATCAAGAATATCGCGAGGTTGTAGAGAGGCGTGTTTATACAGTGACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGATAGTGAACAGATTTTCCAGAATGCAATTAAGGAACATGGGAGAGGCCAGATAGTGGACACGCTGGCAGAAATTCAGGAACGGCATGAAGCAGCCAGAGACGTCGAGAGGAAGCTTCTTGATTTGCAGCAGATATATATGGATTTGGCAGTGTTGGTTGATTCACAGGGAGACATTCTTAACAACATAGAATCCCAGGTATCAAGTGCAGTAGATCATGTACAGCAAGGCAATAATGCATTGGTGAAGGCAAAGAAGGCACAGAAGAGTTCGAGAAAATGGATGCGCATTGCTATTATAATACTTCTTGTTGTCGTCGTCGTGGTTCTTACTTCCGTCCTCAGACCATGGAGTGACAGAAGAGGGGCCTAG 3474 0.4548 MSYPVFKEYTLSPRQNGTLEVCFDKQVSYGSGYWLENSLQVTMPLFALQLAIILSFNRLFILASEPWHLPRIVTDGFAGFLTSPAVLGRSTFFINHIFTFSSMMALETVAALTLVYYMFLIGLEFDLKPIRRSGNKKAIIVAIAGVIFSIPSGIGLYYLLLSDLGRNNMPPTTTGTRHFTGAMLWGMALSCSEFPEIARILTSLKLVLNDNGQLALTSALINDVFSWIFLVISISALHAASGASIASTLVFLLIGVYVVHPLAKWLFQKVDTKDRDLIDAQVVFLLHMILLFGFLADGMGAHSITGAYVLGAITPKGIISKAVQEKVLDFVTAFMMPVFFAVLAQRIHVQDFAWGIHWTSVVVIVLLAFMAKILSTLAVYLLYRLPLKEGFSIGVVMNTKGIVSIIILTTGRDMLALNDQTFGVMLLICWIMTIPVGPVLAAISKFTSSNSGNSQRRTMQGAKPDMPIRVLACVHTSRDANVITNLLKASNPTVKAPIQVFATELVKMTSRPTTALILDDANKQVMESKSKKDLLRGLNQDGNITETEDTLACFENLSQAIFAEKLRVVSDYNTMHKDIFHLAKQRGVTLILTTLYKQPTYDGLGAGTATARAANIVNRESSSKDKKKVVLENLVKEPPCCLGIFIDRGFGQKRGKEQKLAMFYVGGADDREALSYAGRMCRSPNTKLTVVRIIWDNPSEEFDQTDEEYLRIFKFQTRDMRGSVKYLEKVVRDEKETVALLNTVGENGYDLYIAGRGQGRKMSLAQTLDPVLDEPALGPLGDTLADLNSAAETSILILQTQASGDGNAEPAPSEYAYFEGHGDLMLRGGHMTWRASELNGLTKDYSLVKGIDFTIFTQESFEIPRGPGNGDVELGSYLRTSGELGLDTFFKKVQELDKQFERLGKLLRQLQDAHEESKAVTKAPAMKGIKQRMEKDVDEVKKIAHHIKTRIEELDRENLENRQKRGCGKGSGIDRSRTATTTALKKKLKDKMDEFQRLREVMHQEYREVVERRVYTVTGTRADEETIDRLIETGDSEQIFQNAIKEHGRGQIVDTLAEIQERHEAARDVERKLLDLQQIYMDLAVLVDSQGDILNNIESQVSSAVDHVQQGNNALVKAKKAQKSSRKWMRIAIIILLVVVVVVLTSVLRPWSDRRGA 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1349 1157 Gene3D - 884 1010 - -
Lele13g1349 1157 Pfam Sodium/hydrogen exchanger family 58 441 IPR006153 GO:0006812|GO:0015299|GO:0016020|GO:0055085
Lele13g1349 1157 Gene3D - 45 452 IPR038770 -
Lele13g1349 1157 CDD SNARE_syntaxin1-like 1055 1117 - -
Lele13g1349 1157 FunFam Syntaxin 132 1049 1149 - -
Lele13g1349 1157 SUPERFAMILY t-snare proteins 885 1111 IPR010989 GO:0016020|GO:0016192
Lele13g1349 1157 Pfam SNARE domain 1093 1144 IPR000727 -
Lele13g1349 1157 SMART tSNARE_6 1051 1118 IPR000727 -
Lele13g1349 1157 MobiDBLite consensus disorder prediction 961 981 - -
Lele13g1349 1157 Pfam Syntaxin 889 1091 IPR006011 GO:0016020
Lele13g1349 1157 Coils Coil 985 1005 - -
Lele13g1349 1157 Gene3D - 1050 1148 - -
Lele13g1349 1157 Coils Coil 937 957 - -
Lele13g1349 1157 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1056 1118 IPR000727 -
Lele13g1349 1157 SMART SynN_4 881 1007 IPR006011 GO:0016020
Lele13g1349 1157 CDD SynN 886 1043 IPR006011 GO:0016020
Lele13g1349 1157 Coils Coil 893 916 - -
Lele13g1349 1157 PANTHER CATION/H + ANTIPORTER 27 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1349 Lele-ChrLele13 23403541 23410564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1349 860 1157 SNARE and Associated Proteins AT3G03800 68.896 3.44e-132 403
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1349 13 23403541 23410564 Lele15g1094 15 6349797 6352266 hybridization
Lele13g1349 13 23403541 23410564 Lele16g1121 16 6313359 6319395 hybridization