Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1346 ATGGAGATTGACTTCCAGCAACCAAATAAGTTTCAGAAAGCTTCAGTTGTTCCAATGAGCAGAGAAGTAGGCAAGTTCAAAGGAAGGAACAAGAACAATAATGGTACAAACAAATTTGTTGGGGTGAGACAAAGACCTTCTGGAAGATGGGTGGCTGAAATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAAGAAGCAGCCAGGGCTTATGATGAAGCTGCTTGCCTTCTTCGAGGATCCAACACTCGCACAAACTTCATCACCCGTGTCTCCACTGATTCTCCTCTCGCTTCTCGTATTCGAAATCTGCTTAACAACAGAAAAGGAGCCAAAGAACAAGATGTTGATGCTTCTTCTTCCGCAAGAGTAAACCCTAGTAGCTCTCCTACTAGTACTACTACTAGGAGCTCAGACTCAAGCAATGGTGACAAAAATGATAGTGATCTTTCTGGTGGGAAAATTCTGAACTCAGGGTTATTTGCTGATGGATATAGACCAGATTTGAGCAGTTGTAGGGAGGAATCTAATCTTTCATGGGGTCTTGGACCTTTCATTGATCGTTTTCCTTTTGCTCAGTCTGAAGATGGTGTTGCTGAGACAGTTGAGTTAGAGCTTTCAGAATTTGAGAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTTCATGAGTACATGGAAACTGTCCAGGACTCTAATGAAGAAGAAGCTCTTTGGGATCTTCCACCTTTATGATTGTTATGTATCGCGGGCCCTCATTTCAATCCATTCGAGAAAGACCATGGGGCTCGAACAGATGATGAGCGTCATGCTGGAGATTTGGGTAACATTGTTGCGGGCCCTGATGAGATTGCTGATGTTTCAATCACAGACAGACAGATACCACTAAGTGGAGTTCATTCCATACTTGGGAGGGCAGTCGTTGTGCATGCTGATGCTGACGATCTTGGTAGAGGTGGGCATGAACTAAGCAAGACCACTGGTAATGCAGGTGCAAGAGTAGGATGCGGTAATGCTTCTATTCTACAATCAATTTCGCTATTACTAAACTAA 1092 0.4304 MEIDFQQPNKFQKASVVPMSREVGKFKGRNKNNNGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITRVSTDSPLASRIRNLLNNRKGAKEQDVDASSSARVNPSSSPTSTTTRSSDSSNGDKNDSDLSGGKILNSGLFADGYRPDLSSCREESNLSWGLGPFIDRFPFAQSEDGVAETVELELSEFERMKVERQISASLYAINGVHEYMETVQDSNEEEALWDLPPLXLLCIAGPHFNPFEKDHGARTDDERHAGDLGNIVAGPDEIADVSITDRQIPLSGVHSILGRAVVVHADADDLGRGGHELSKTTGNAGARVGCGNASILQSISLLLN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1346 363 Gene3D AP2/ERF domain 37 97 IPR036955 GO:0003700|GO:0006355
Lele13g1346 363 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
Lele13g1346 363 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Lele13g1346 363 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Lele13g1346 363 FunFam ethylene-responsive transcription factor RAP2-11 37 96 - -
Lele13g1346 363 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Lele13g1346 363 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Lele13g1346 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 226 - -
Lele13g1346 363 MobiDBLite consensus disorder prediction 109 158 - -
Lele13g1346 363 PRINTS Cu-Zn-superoxide dismutase family signature 327 353 IPR001424 GO:0006801|GO:0046872
Lele13g1346 363 PRINTS Cu-Zn-superoxide dismutase family signature 302 324 IPR001424 GO:0006801|GO:0046872
Lele13g1346 363 PRINTS Cu-Zn-superoxide dismutase family signature 283 292 IPR001424 GO:0006801|GO:0046872
Lele13g1346 363 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Lele13g1346 363 Gene3D Superoxide dismutase, copper/zinc binding domain 197 358 IPR036423 GO:0006801|GO:0046872
Lele13g1346 363 CDD Cu-Zn_Superoxide_Dismutase 235 349 IPR001424 GO:0006801|GO:0046872
Lele13g1346 363 MobiDBLite consensus disorder prediction 125 158 - -
Lele13g1346 363 SUPERFAMILY Cu,Zn superoxide dismutase-like 263 352 IPR036423 GO:0006801|GO:0046872
Lele13g1346 363 Pfam Copper/zinc superoxide dismutase (SODC) 263 351 IPR001424 GO:0006801|GO:0046872
Lele13g1346 363 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1346 Lele-ChrLele13 23387627 23391349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1346 25 261 AP2-EREBP Transcription Factor Family AT5G19790 41.634 3.19e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g1346 Sod_Cu 4.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1346 13 23387627 23391349 Lele15g1099 15 6366955 6368279 hybridization
Lele13g1346 13 23387627 23391349 Lele16g1124 16 6332931 6334893 hybridization