Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1333 ATGGCAATTGCACGAACGGGAGTCTATGTCGACGATTATTTGGAGTACGCGAGTACACTGCCTGCTGAGCTTCAGAGGTTGCTCAATACCATCAGAGAACTCGATGACCGATCCCAATCTATGATAAACCAGACGATGCAGCAGACGAAGTACTGCTTGGGGTTGTCATCACATGGCTATAAGAAGGGTTATCATAATAGTGGCCATCATTATAATAACAATAATATGAATGAAGAAGATGAAATTGCAATGGAGAAAATGCGAAGAGAAATTGAGGCAAATCAAGATAGTGCATTTAGTCTATGTACTGAGAAGGTTTTATTGGCAAGGCAAGCATATGACCTGATAGATAGCCATGTAAAGCGACTTGATGAGGATTTGAACAACTTTGCTGAAGATCTAAAGCAAGAGGGGAAAATACCACCAGACGAACCAGCAATTCTCCCCCCGTTGCCTCTAGTTCTTAAAAGTGAAAACCGGAAGTCCATGTATGGAACACCTCTATCGAAGAGACTGGATTACCGGGATAGAGACTGGGATAGAGAGCGCGATAGGGACTTCGAGCTCATGCCTCCACCAGGAAGCCATAAAAAGGATTATGCAGCACCTGTGGATTTTGATCAACCAATTGATCCTAATGAACCCACGTACTGTGTTTGTCATCAGGTGTCTTTTGGTGATATGATTGCATGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCACTATGCATGTGTTGGCCTAACACCAGAGACAAGATTCAAGGGAAAATGGTACTGCCCAACCTGCAAATTGCTTCCACAGTGTCAATGA 816 0.435 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDDRSQSMINQTMQQTKYCLGLSSHGYKKGYHNSGHHYNNNNMNEEDEIAMEKMRREIEANQDSAFSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPLVLKSENRKSMYGTPLSKRLDYRDRDWDRERDRDFELMPPPGSHKKDYAAPVDFDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCKLLPQCQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1333 271 Pfam PHD-finger 217 265 IPR019787 -
Lele13g1333 271 SMART PHD_3 217 265 IPR001965 -
Lele13g1333 271 Gene3D - 5 128 - -
Lele13g1333 271 CDD ING_plant 17 127 - -
Lele13g1333 271 FunFam PHD finger protein ING 209 267 - -
Lele13g1333 271 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Lele13g1333 271 Coils Coil 24 44 - -
Lele13g1333 271 CDD PHD_ING 217 264 - -
Lele13g1333 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 266 IPR013083 -
Lele13g1333 271 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Lele13g1333 271 SUPERFAMILY FYVE/PHD zinc finger 197 265 IPR011011 -
Lele13g1333 271 SMART ING_2 9 130 IPR024610 -
Lele13g1333 271 Coils Coil 77 97 - -
Lele13g1333 271 PANTHER INHIBITOR OF GROWTH PROTEIN 2 265 IPR028651 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1333 Lele-ChrLele13 23317760 23320993 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele13g1333 ING 1.5e-18 No_clan