Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1330 ATGGAAACTGAAATTGAGATTGAGACTGATCGCGTGCCCCTGAACGCCAACGCCTGTCGCCTGAACGCCAACGCCTGTCGCCTGAACGCCAAGTCGCCGACTCGCCAACGCCTGTCGCCTGAACGCCAAGTCACCAACGCCTGATTGGTTTTCTTCCTCTTCCCATCTCTCTCTAGAATTCAAAAAATACATTTGACGGACATGGATGTTTGCCGGAATGCATCAGTTGCCGGCGACTGCGAACAAGAGCAGGTCCTCTTGTCTTCCCGCTCAAAGCTTTCTACCATCTCAACCGCCCTTGACGACCTCTTCTCTTCTCATAACACTGAAGTGGATGTTGGCTTAGAATGGCTCTCTGTATTTGTGGAGGACTGTTTTTCCAGCTCAGCATGTTGCCTCTTGGCACCTACTGATGCCCAAAACACAGAGGCAAACTCTAAACCCTCCGTACAGTTACAGAGAACCCAGCAAAAGCAGTCTCCTCTGCAAACGTTTCTGGTGCCAGGAAAGGCAAGAAGCAAAAGGAAAAGGCTTTCAGCCCCTAGAACGAAGGACCCATTAAGCAGCTGGTCACACCATTTGAACCCACAAAATGAACCCATAACTTCAGATCCTCCTCTTCTTAAACAAGCCTACTGGTTAGCTGATAGTGAACTCATGGTACCCAAGAAGGAAGATGAGAAAGTAGCAATGAAGGATGGAGAAGCAGAGCAAGAGGCGGTGGAAGAGAAGAGGGCTGTGAGGAAGAAGGAGAGTTTTGAGAGCTTAGTCTCAGAGTATGAAGAAGGTAGCAATGGGCAGAATCAAATGCCAAGAAGGTGTACCCATTGCCTTGCACAGAGGACCCCACAATGGAGGGCCGGACCTTTGGGTCCAAAAACACTATGTAATGCATGTGGAGTGAGGTACAAGTCTGGTAGATTGCTTCCAGAATATAGGCCAGCTAAGAGTCCCACTTTTGTAAGCTACTTGCACTCCAATTCCCACAAAAAGGTCATGGAGATGAGAATGGCTGTTCTGTCTTCTGTTCCTAGTGAGGACTAA 1044 0.4875 METEIEIETDRVPLNANACRLNANACRLNAKSPTRQRLSPERQVTNAXLVFFLFPSLSRIQKIHLTDMDVCRNASVAGDCEQEQVLLSSRSKLSTISTALDDLFSSHNTEVDVGLEWLSVFVEDCFSSSACCLLAPTDAQNTEANSKPSVQLQRTQQKQSPLQTFLVPGKARSKRKRLSAPRTKDPLSSWSHHLNPQNEPITSDPPLLKQAYWLADSELMVPKKEDEKVAMKDGEAEQEAVEEKRAVRKKESFESLVSEYEEGSNGQNQMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSSVPSED 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1330 347 ProSitePatterns GATA-type zinc finger domain. 274 299 IPR000679 GO:0006355|GO:0043565
Lele13g1330 347 MobiDBLite consensus disorder prediction 142 203 - -
Lele13g1330 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 269 332 - -
Lele13g1330 347 SMART GATA_3 268 322 IPR000679 GO:0006355|GO:0043565
Lele13g1330 347 CDD ZnF_GATA 273 320 IPR000679 GO:0006355|GO:0043565
Lele13g1330 347 Gene3D - 264 335 IPR013088 GO:0006355|GO:0008270
Lele13g1330 347 MobiDBLite consensus disorder prediction 142 166 - -
Lele13g1330 347 FunFam GATA transcription factor 264 344 - -
Lele13g1330 347 Pfam GATA zinc finger 274 308 IPR000679 GO:0006355|GO:0043565
Lele13g1330 347 ProSiteProfiles GATA-type zinc finger domain profile. 268 304 IPR000679 GO:0006355|GO:0043565
Lele13g1330 347 PANTHER GATA TRANSCRIPTION FACTOR 80 341 - -
Lele13g1330 347 MobiDBLite consensus disorder prediction 184 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1330 Lele-ChrLele13 23298750 23300591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1330 88 336 C2C2-Gata Transcription Factor Family AT4G32890 36.680 4.87e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele13g1330 GATA 1.6e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0676 05 3989437 3990697 Lele13g1330 13 23298750 23300591 CCT
Lele13g1330 13 23298750 23300591 Lele15g1115 15 6458457 6459955 hybridization
Lele13g1330 13 23298750 23300591 Lele16g1146 16 6421769 6423707 hybridization