Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1319 ATGGCTACCCCGCAGTCCCATTTACCTCCTGAGAAGGCAGCGTTTGGGGATAAGGAATGGTACTTCTTCAGTCCTCGAGACCGCAAGTACCCAAACGGGGCGAGGCCGAACAGGGCAGCTGCTTCAGGGTACTGGAAGGCGACGGGAACTGATAAGACCATAGTGGCGTCGTTGCCGGGAGGCGGAGCGACGGAGAGCATGGGCGTGAAGAAGGCTCTGGTGTTCTACACCGGAAAACCACCCAAGGGCGTCAAGACCAACTGGATCATGCACGAATATCGCCTCCTCCACGACACCAGAAACAGACCCCTCAAGTTCCAAGGCATGAGGTTAGATGACTGGGTTCTTTGCCGGATTTACAACAAGTCCAAATATGCTGCTGAATCTCCCACTGCTGAAGCAGAAACCTTGGTGCCCGGCCAAGATGTCGCACATGAGCAGATGTTACCGAGCTCTCAATCTCCCCCTACTCATCAAAATCTGATTTCTCAGAAATCATTGTCTTTCTCGAACCTGTTAGACGCCACCGACTTCTCCATGTTGAGCAGCTTATTATCCGACAACTATTCCACCCCACCTGGGTTTGAATCTGCTGCTGCAGCTAATCCTAACTCTGAGATTATCAATCTGGATCAGCAATCATCCCAAAACATTCATCCCAACAACAACAGCTACTTGCTTCAGAGGACCCCCCAATTGAACCCCTCCGTCCAAAACACAGATAACAATAACATGCACAAGCGTCAGATTTCAGGCCTGGACGAGGATGTTTCATACCCATCCAAGAGGTATATCACCTCATCCTGCAGTTTCTGTAAAAACAATACCAACCAACTCGAGAACTTTCTCCTCAAGCAGTCCTTGTTGAACCAGCAGTTACTTCTCGGTCCTCAGTATCTTCGCTTTCAGGGATAA 915 0.5005 MATPQSHLPPEKAAFGDKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPGGGATESMGVKKALVFYTGKPPKGVKTNWIMHEYRLLHDTRNRPLKFQGMRLDDWVLCRIYNKSKYAAESPTAEAETLVPGQDVAHEQMLPSSQSPPTHQNLISQKSLSFSNLLDATDFSMLSSLLSDNYSTPPGFESAAAANPNSEIINLDQQSSQNIHPNNNSYLLQRTPQLNPSVQNTDNNNMHKRQISGLDEDVSYPSKRYITSSCSFCKNNTNQLENFLLKQSLLNQQLLLGPQYLRFQG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1319 304 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 220 - -
Lele13g1319 304 ProSiteProfiles NAC domain profile. 1 122 IPR003441 GO:0003677|GO:0006355
Lele13g1319 304 Pfam No apical meristem (NAM) protein 6 95 IPR003441 GO:0003677|GO:0006355
Lele13g1319 304 Gene3D NAC domain 3 127 IPR036093 GO:0003677|GO:0006355
Lele13g1319 304 SUPERFAMILY NAC domain 10 122 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1319 Lele-ChrLele13 23245409 23246619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1319 10 304 NAC Transcription Factor Family AT3G04070 45.016 4.12e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele13g1319 NAM 9.5e-20 No_clan