Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1317 ATGTCCCCTACAATTCAGACTTATCATGCTCTGTTCCGTGTTTTAAGGGCTAAAGAGGAGGTATTTGAACTTTGGATCAAGATGAGAGAGGCGGGTTGCAACCCAACTATTGAGACTTACATAATGTTGATAAGGAGGTTTTGCCAATGGCGCCAGTTATATGTTGCTAAGTTATGGAGTGAGATGAGGGAATACGGATTCAACCCTGATCATAGCTCTTACACTGCACTGATTCACGGCTTGTGTTTTAATGGGAAAATTGAGGATGCTTGCAAATATTATTTAGAGAGGCGCATTCCTTCTCTTTGGAGATTGCACTTGTCGGCTGTCATGGGGACACCGCCGCATGTAGCCCTAATAACTGCACATTCGGTGGCATCTGGAACGGTTGGAATTGCTGACATAAACAAGCCCAGCGGCAAAATTCGAATAGTGGATTATAAGATTGCAGTAGAGCTTGTTTGCAAGACAACATTAGAGGAAGCCAAGTCCATATTCCCACTAGTCCGCAAGATTGTGCTCAAATATGTGTGCCTCGATCTTGTATATCAGTATGCGTTCCTGGTTGATGACTTTGGGCTAGATCCATGGCAAGAAGTGACGATGGTGAAGCAAGGGAACTACAAGGATTATCTGGTGGAAGCAACTTGGCCCTTAGGAGCCGCCATTGAAGCCGTATCAGCTTTGATCGACTCTTTTACTTTGTTTAATATTCCCCGTTTACTATGA 729 0.4403 MSPTIQTYHALFRVLRAKEEVFELWIKMREAGCNPTIETYIMLIRRFCQWRQLYVAKLWSEMREYGFNPDHSSYTALIHGLCFNGKIEDACKYYLERRIPSLWRLHLSAVMGTPPHVALITAHSVASGTVGIADINKPSGKIRIVDYKIAVELVCKTTLEEAKSIFPLVRKIVLKYVCLDLVYQYAFLVDDFGLDPWQEVTMVKQGNYKDYLVEATWPLGAAIEAVSALIDSFTLFNIPRLL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1317 242 Gene3D Exopolyphosphatase. Domain 2 113 205 - -
Lele13g1317 242 TIGRFAM PPR: pentatricopeptide repeat domain 73 95 IPR002885 -
Lele13g1317 242 Pfam PPR repeat 66 92 IPR002885 -
Lele13g1317 242 Pfam Pentatricopeptide repeat domain 4 45 IPR002885 -
Lele13g1317 242 Gene3D Tetratricopeptide repeat domain 1 98 IPR011990 GO:0005515
Lele13g1317 242 Pfam GDA1/CD39 (nucleoside phosphatase) family 145 229 IPR000407 GO:0016787
Lele13g1317 242 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 2 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1317 Lele-ChrLele13 23233706 23235162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1317 130 228 Calmodulin-binding Proteins AT3G04080 52.525 2.27e-29 112