Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1304 ATGGATTCCCTTGAAACCGATCAGAAATACCCATTACAAAGTTCAGCGCTGGCAACTGACGGTGATGCACCTACTGATGCAGGAGATGATGTCAAATTGAGGTCTAGGGACCAAAGAGAAGCTCTACCAGGTGAGCCGAAGTGTGTTATATGTGGCCGCTATGGTGAGTACATAAGTGATGAAACTGATGATGATGTTTGCAGCTTGGAATGTAAACAGAAACTACTACACAGAACTGACTGCCCCTCATTGCCTTCTGTTACTCGTTCATCTAAAATGCTTCCTGCAACTGATGAGTGCTTTTATGTTAGAGATAATGACTATGAATCAGGTACTCAGTCCAGAAATGAGGTTGATATGCTTAGAAAGAAACTTTACATTCATGTGAAGGGTGATGTAGTAGCACCAGTATTATCATTCAGTAGTTGCAACCTTCCCGATAAGCTCCTCCACAATATAGAAGCTGCAGGATATGACATGCCTACACCTGTCCAGATGCAGGCAATACCAGCTGCTTTGACGGGAAAAAGCATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCATTTTTAATTCCAATAGTGTCTCATTGTGCAAGGCATCGCCTTGAGCATGCCTCTGATAAGAAGATGCCATTAGCTATGGTGTTAGCACCTACGAGAGAGCTCTGTATTCAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGATTGCCTTTTAAAACTGCACTTGTGGTCGGTGGTGATGCCATGGCTGGACAGGTCTATCGCATTCAGCAAGGAGTAGAATTGATTGTAGGAACTCCTGGAAGGCTGGTTGATCTTTTAACAAAGCATGAGATTGACTTAGATGATATGATGACATTTGTTGTGGATGAGGTGGACTGCATGCTGGAAAGGGGTTTCCGAGATCAGGTCATGCAGATATATTGGGCTTTGTCCCAGCCCCAGGTCTTGATGTATTCGGCAACAATCTCTCATGAGTTAGAGAAGATGTCAAACTCTCTGGCAAAAGATACTGTGGTTATATCTGTGGGTGATCCTAATAGACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGACTCAAAGCAGAAGAAGCAGAAGCTGTTTGACATTTTGGTCAGTAAGCAGCATTTTAAGCCGCCTGTGGTTGTGTATGTGGGGTCTAGACTTGGGGCAGATCTTCTGGCCAATGCCATTGCAGTTACCACTGGGATCAAAGCACTGTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATTATGAGGTCCATTTTAGTAGGTGAGGTTCCAGCGGTTGTGGCAACTGGAGTTTTGGGTAGAGGGGTTGATCTATTAGGTGTAAGACAGGTAATTGTGTTTGACATGCCTAATTCAATTAAGGAGTATGTACATCAGGTTGGAAGGGCGTCTAGGATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGAGGAGAATAAGAATGTCTTTGCAGAGTTGATTGAAGTCTTAAAATCTGCCGGAGCAGCTGTGCCTCGGGAGCTTGTCAACTCACAATATGCCAAGGGATTTTTCTCTGGTGGCAAAGGTCCAAAAAAGAGGAAGAACAGTTCATGA 1617 0.4397 MDSLETDQKYPLQSSALATDGDAPTDAGDDVKLRSRDQREALPGEPKCVICGRYGEYISDETDDDVCSLECKQKLLHRTDCPSLPSVTRSSKMLPATDECFYVRDNDYESGTQSRNEVDMLRKKLYIHVKGDVVAPVLSFSSCNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKSMLVLADTGSGKSASFLIPIVSHCARHRLEHASDKKMPLAMVLAPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQVYRIQQGVELIVGTPGRLVDLLTKHEIDLDDMMTFVVDEVDCMLERGFRDQVMQIYWALSQPQVLMYSATISHELEKMSNSLAKDTVVISVGDPNRPNKAVKQLAIWVDSKQKKQKLFDILVSKQHFKPPVVVYVGSRLGADLLANAIAVTTGIKALSIHGEKSMKERREIMRSILVGEVPAVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQVGRASRMGEEGQAIVFVNEENKNVFAELIEVLKSAGAAVPRELVNSQYAKGFFSGGKGPKKRKNSS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1304 538 Gene3D - 104 347 IPR027417 -
Lele13g1304 538 SMART helicmild6 398 480 IPR001650 -
Lele13g1304 538 SMART ultradead3 157 360 IPR014001 -
Lele13g1304 538 Pfam DEAD/DEAH box helicase 162 333 IPR011545 GO:0003676|GO:0005524
Lele13g1304 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 345 IPR014001 -
Lele13g1304 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 166 IPR014014 GO:0003724
Lele13g1304 538 MobiDBLite consensus disorder prediction 1 20 - -
Lele13g1304 538 CDD SF2_C_DEAD 357 489 - -
Lele13g1304 538 Gene3D - 348 522 IPR027417 -
Lele13g1304 538 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 134 519 - -
Lele13g1304 538 Pfam Helicase conserved C-terminal domain 371 480 IPR001650 -
Lele13g1304 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 519 IPR001650 -
Lele13g1304 538 Gene3D - 27 82 - -
Lele13g1304 538 MobiDBLite consensus disorder prediction 1 38 - -
Lele13g1304 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 494 IPR027417 -
Lele13g1304 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 347 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1304 Lele-ChrLele13 23151176 23153179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1304 139 500 Eukaryotic Initiation Factors Gene Family AT1G72730 31.608 8.10e-51 177