Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1277 ATGGAGAGACGTATGCTACCAAGAGCTCCCGGCGTCCCTTGGATAGAAGAAGTTGAAGACGCAGCATCTTGGACCAGAACTAACAACGAAGGTGAGTCCAAGGAACAGGACATTGCTTTGGGAGGTCCTCTAACGTCCTTCAAATCCATGCTCGAAGGTGAATGGTACATGGATTCTGCTATCAATTCATCTTATCATCAAGATCTCCCTGGTCTCCCAGTTCACCATGAAACCAGAGATATCGGTTTTTGTTCGAATCCAAATGATAATTTCCTGTTGCAGCCTCTGGATTCATCTTTTTCACCGTCATTCACTATCGACCCGGCGCAGTCACAGCCATTTTTACCACCCAAATCGTGCTTCCCTTCTCTCTTCAACGCTGCTTGCAACAACCCGTTTGAGAATAATGGCTTCGATTTGGGCTCTGAAAGTGGGTTTCTCGGTCACTTCCAGGGAAATCAGACTTCTAGTTCCCATGTTCTGATGGGATTTTCGGGCTTGAGTTCTCAACCACAGATGGGCAACCTCGAGCTTGGTTCTAGCACTGAATTCCCAGCAACTCGTATGTTGCCTGCTGCTGACAATGGCGTCACACTTGGTGGCGGATTTTGTCCAATGGGTTTAGAAGGATACGATGGTTCCAGAAATGCTCTGTTTTCTAACAAGGCTAAGGTTTTAAGACCACTTGATGTTTTCCCTCCTGTTGGTGCCCAACCCACTCTCTTCCAAAAGCGAGCTGCGCTTCGCCAAACCTCTGGCGGAGCTGATAAATTGGGAGCTTTAGAGATTTCGCCGTCTGCATTTAACGATTATTCAAATATGGAGAAGAAGAGGAAGTTAGAAGACGGCGAAATCGAAGAAGCCAGCATCGATGCGTCCGGACTGAATTATGATTCTGATGATCTTAATGAGAACAGTAAGGCGGAGGAGAATGGGAATAACGGCGGAAGCAATTCTAATGCAAACAGTACTGTTACAGGTGGAGATCAGAAGGGGAAGAAGAAGGGATTACCTGCGAAAAATCTCATGGCCGAGAGAAGGCGCAGGAAGAAACTAAATGATAGGCTATACATGCTTCGGTCGGTTGTGCCGAAGATTAGTAAGATGGATAGGGCTTCCATACTTGGGGATGCAATTGACTACTTGAAGGAGCTGCTTCAGCGGATCAACGATCTTCATAATGAGCTGGAGTCAACCCCACCCGGTTCACTGCCCCCACCTTCTACAAATTTCCACCCTTTGACGCCCACTCTCCCAACCCTTCCCTGCAGGGTCAAGGAAGAACTTTGCCCTACCTCTTTGCCGAGCCCTAAGAACCAACCTTCGCGAGTGGAGGTTAGGTTAAGGGAAGGGAGAGCTGTGAACATCCATATGTTTTGTGCCCGCAGACCAGGGCTTCTTCTTACCACCTTGAAGGCTTTGGACAGCCTTGGATTGGACATTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCTTTAGATGTGTTCCGAGCTGAGCAATGCAGAGAAGGCCAGGATGTTGCCCCCGAGCAAATTAAAGCAGTATTGTTGGATTCAGCGGCTTGCCATGGAATTGTGTGA 1584 0.4792 MERRMLPRAPGVPWIEEVEDAASWTRTNNEGESKEQDIALGGPLTSFKSMLEGEWYMDSAINSSYHQDLPGLPVHHETRDIGFCSNPNDNFLLQPLDSSFSPSFTIDPAQSQPFLPPKSCFPSLFNAACNNPFENNGFDLGSESGFLGHFQGNQTSSSHVLMGFSGLSSQPQMGNLELGSSTEFPATRMLPAADNGVTLGGGFCPMGLEGYDGSRNALFSNKAKVLRPLDVFPPVGAQPTLFQKRAALRQTSGGADKLGALEISPSAFNDYSNMEKKRKLEDGEIEEASIDASGLNYDSDDLNENSKAEENGNNGGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPPSTNFHPLTPTLPTLPCRVKEELCPTSLPSPKNQPSRVEVRLREGRAVNIHMFCARRPGLLLTTLKALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVAPEQIKAVLLDSAACHGIV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1277 527 Pfam Helix-loop-helix DNA-binding domain 343 385 IPR011598 GO:0046983
Lele13g1277 527 Gene3D - 330 399 IPR036638 GO:0046983
Lele13g1277 527 FunFam BHLH transcription factor 332 400 - -
Lele13g1277 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Lele13g1277 527 MobiDBLite consensus disorder prediction 290 342 - -
Lele13g1277 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 406 IPR036638 GO:0046983
Lele13g1277 527 MobiDBLite consensus disorder prediction 308 329 - -
Lele13g1277 527 Coils Coil 379 399 - -
Lele13g1277 527 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 201 522 - -
Lele13g1277 527 SMART finulus 342 391 IPR011598 GO:0046983
Lele13g1277 527 CDD bHLH_AtAMS_like 339 406 - -
Lele13g1277 527 CDD ACT_UUR-ACR-like 456 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1277 Lele-ChrLele13 22969863 22973128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1277 23 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 56.327 1.11e-153 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele13g1277 HLH 2.2e-09 No_clan