Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1234 ATGGGGGATAACCCCACTAATATTGAAGAAATGAATCAAAGCCCTGAAGGGGAAGCTGAAGGAGGAGAAGAGAGAGATCCGGAAAGCAATCCCCTGAATGAGCCACTGCTCAAGAGGAATCGAACACTTTCCACCAATCCTCTTGCTCTCGTCGGAGCCAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAACGAGAATGATCTGTTCAAGCATGATTGGAGGAGCAGATCGAGAGTTCAGGTTTTGCAGTACATATTCTGTAAATGGTCGCTGGCTTTCCTTGTTGGACTTCTTACAGGACTTGTGGCCACCCTCATCAATCTTGCAATTGAGAACATTGCGGGTTACAAGATTCTCGCCGTCGTCGGATTCATCGAGAATGACAGGTATTTAGCGGGCTTCTTATATTTCACCGGCGTGAATTTCTTATTAACATTCGTCGCTGCTGTTCTGTGTGTGTGCTTTGCACCCACAGCAGCAGGACCTGGTATCCCTGAAATCAAAGCTTATCTTAATGGCGTCGATACTCCCGACATGTATGGCGCCAAGCCATTGATCGTCAAGATAATTGGAAGCATTGGAGCGGTGGCTGCAGGGCTAGATTTAGGAAAAGAAGGACCATTAGTACATATTGGGGCCTGCATAGCTTCCTTACTAGGCCAAGGAGGCACGGAGAAACACAGGATCAAATGGCGATGGCTTCGATATTTCAACAACGATCGTGACCGCCGAGATCTCATCACATGTGGAGCTTCCTCAGGGGTTTGTGCAGCATTCAGGGCACCTGTTGGAGGAGTTCTGTTTTCTCTAGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTCTGGAGAACCTTTTTCAGCACAGCCGTGGTGGCGGTAGTGCTCAGGGCCTTCATTGAAGTCTGCAATTCTGGGAAATGTGGCCTTTTTGGCACAGGAGGGTTGGTCATGTTTGATGTCAGCAGTGTCACAGTGAAATACCATGTAATGGATATCATCCCTGTTGTTATCATTGGAATCATTGGTGGGGTATTGGGAAGCCTTTATAACCATCTTCTTCACAAGATCCTCAGAGTCTACAGTATCATCAATCAGAAGGGAAAAATGCACAAGCTCCTGCTCAGTCTCTCAGTTGCACTCTTCACATCAGTATGCCAATATTGTCTACCATTCCTATCAAGATGCATCCCCTGTAATCCATCGCTTCCAGAAAATACCTGCCCCACGAATGGACGGTCTGGAAATTTTAAACAGTTCAATTGCCCCAGTGGTCACTACAATGAACTCGCTACTTTGTTGCTTACCACTAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCCACATGAGTATCATCCATCTTCCCTCCTACTTTTCTTTGCACTCTATTGCATATTAGGACTCATTACTTTTGGGATTGCTGTGCCATCTGGGCTCTTCCTCCCAATAATCCTCATGGGTTCTGGTTATGGCCGTCTTCTTGGCCTCTTGATGGGACCTCACACAAAAATTGACCAGGGGCTGTTTGCTGTTCTTGGTGCAGCCTCCCTCATGGCAGGTTCAATGAGAATGACAGTATCAGTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTGCTACTACCCATTACAATGATTGTTCTCCTGATAGCCAAGACAGTTGGGGACAGTTTTAACCCTAGCATCTATGAAATTATTCTACACTTGAAAGGGCTTCCTTTCTTGGACGCAAATCCTGAGCCATGGATGAGAAATCTCACAGTGGGTGAGCTTGTTGATGTAAAACCACCGGTAATTACCCTCAATGGAGTAGAGAAGGTGGCTCGCATAGTGGAAGTTCTTAAAAACACCACATATAATGGTTTCCCTGTCGTGGATGAACCAGTGGAAGCTTCAAGAGGGGTGGCCAAGCTTCATGGACTGATCCTAAGAGCACACCTTGTGTTAGCGCTAAAGAAGAAATGGTTCACGAAGGAAAGAAGGAGGACAGAGGAATGGGAAGTGAGAGAGAAATTTACATGGGTGGACATGGCAGACAGAGAAGTGAATATTGAGGAAGTGGCCGTGTCGAGGGAGGAAATGGATTTGTTCGTTGATCTTCATCCTTTCACCAATACGACTCCTTTTACAGTTCTGGAGAGCATATCGGTGGCAAAAGCGATGGTCCTCTTCAGACAACTAGCTCTTCGACATATGCTTGTTTTGCCCGATTATCAACCATCTGGGGTATCTCCTGTAATTGGGATCTTGACCAGGCAGGATCTACTAGCCCACAACATTCTTACAGTCTTTCCTCACCTGAAGAAAATGTGA 2331 0.4595 MGDNPTNIEEMNQSPEGEAEGGEERDPESNPLNEPLLKRNRTLSTNPLALVGAKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFCKWSLAFLVGLLTGLVATLINLAIENIAGYKILAVVGFIENDRYLAGFLYFTGVNFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPDMYGAKPLIVKIIGSIGAVAAGLDLGKEGPLVHIGACIASLLGQGGTEKHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRAFIEVCNSGKCGLFGTGGLVMFDVSSVTVKYHVMDIIPVVIIGIIGGVLGSLYNHLLHKILRVYSIINQKGKMHKLLLSLSVALFTSVCQYCLPFLSRCIPCNPSLPENTCPTNGRSGNFKQFNCPSGHYNELATLLLTTNDDAVRNIFSTNTPHEYHPSSLLLFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGLLMGPHTKIDQGLFAVLGAASLMAGSMRMTVSVCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNLTVGELVDVKPPVITLNGVEKVARIVEVLKNTTYNGFPVVDEPVEASRGVAKLHGLILRAHLVLALKKKWFTKERRRTEEWEVREKFTWVDMADREVNIEEVAVSREEMDLFVDLHPFTNTTPFTVLESISVAKAMVLFRQLALRHMLVLPDYQPSGVSPVIGILTRQDLLAHNILTVFPHLKKM 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1234 776 ProSiteProfiles CBS domain profile. 710 775 IPR000644 -
Lele13g1234 776 SMART cbs_1 603 658 IPR000644 -
Lele13g1234 776 SMART cbs_1 713 766 IPR000644 -
Lele13g1234 776 SUPERFAMILY Clc chloride channel 68 583 IPR014743 -
Lele13g1234 776 Pfam Voltage gated chloride channel 147 561 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g1234 776 Gene3D - 600 749 IPR046342 -
Lele13g1234 776 Gene3D Clc chloride channel 82 583 - -
Lele13g1234 776 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 34 767 - -
Lele13g1234 776 Pfam CBS domain 712 762 IPR000644 -
Lele13g1234 776 Pfam CBS domain 595 658 IPR000644 -
Lele13g1234 776 CDD ClC_6_like 59 581 - -
Lele13g1234 776 ProSiteProfiles CBS domain profile. 600 665 IPR000644 -
Lele13g1234 776 PRINTS Plant CLC chloride channel signature 275 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g1234 776 PRINTS Plant CLC chloride channel signature 432 448 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g1234 776 PRINTS Plant CLC chloride channel signature 64 72 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g1234 776 PRINTS Plant CLC chloride channel signature 307 314 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g1234 776 PRINTS Plant CLC chloride channel signature 289 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele13g1234 776 MobiDBLite consensus disorder prediction 18 32 - -
Lele13g1234 776 SUPERFAMILY CBS-domain pair 585 763 IPR046342 -
Lele13g1234 776 CDD CBS_pair_voltage-gated_CLC_euk_bac 601 764 - -
Lele13g1234 776 MobiDBLite consensus disorder prediction 1 36 - -
Lele13g1234 776 FunFam Chloride channel ClC3 82 397 - -
Lele13g1234 776 PRINTS Chloride channel signature 512 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g1234 776 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g1234 776 PRINTS Chloride channel signature 530 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g1234 776 PRINTS Chloride channel signature 159 176 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g1234 776 PRINTS Chloride channel signature 190 209 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g1234 776 PRINTS Chloride channel signature 254 273 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele13g1234 776 PRINTS Chloride channel signature 568 582 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1234 Lele-ChrLele13 22657205 22660725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1234 9 775 Ion Channels AT3G27170 75.357 0.0 1202