Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1195 ATGGCTCGTCTCGCAGCTTGCTTTCTTCTCTTCTCTCTCTCTCTCATTGTTTCCTGCTTTGCAGCTCAAGACCCTGAGCTAGTTGTACAAGACGTACACAGAAGAATCAATGCGTCTAGAAGAAATTTGGGATATTTATCGTGTGGAACGGGCAACCCCATTGACGACTGCTGGAGGTGCGACCCGAACTGGGAGAGGAACCGGCAGAGGCTGGCCGATTGCGCCATCGGGTTCGGCAAGGACGCCATCGGCGGGAGAAACGGTCGAGTCTATGTGGTGACTGACTCCGGCGATGACGACCCCGTGAACCCTAAGCCAGGAACTCTGAGACACGCCGTCATACAAGACGAGCCGTTGTGGATTATCTTCAAGAGAGACATGGTGATAACCCTAAAACAAGAACTCGTTATGAACTCCTTCAAGACCATTGACGGAAGAGGAGCGAGCGACAAGAACATGCAGGTCACCATCGCCTTCAACCACTTCGGAGAAGGCCTCGTCCAGAGAATGCCAAGGTGTAGGCACGGGTATTTTCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCGATTGGAGGGAGTGCGAATCCTACTATAAACAGCCAGGGGAATAGGTTTCTGGCACCGGATAATAGGTTTAGCAAGGAGGTGACGAAGCACGAGGATGCAGAAGAAGGAGAGTGGATGAACTGGAACTGGAGATCAGAAGGTGACTTGTTCTTGAACGGAGCTTATTTCAGGCAATCTGGTGCGGGAGCTTCTTCAAGCTACGCTAGGGCATCAAGTCTCAGTGCGAGACCTTCTTCTCTTGTTGGCTCCATGACCATTACTGCTGGGGTACTCACGTGCAGGAAGGGCGCGCGTTGCTGA 876 0.516 MARLAACFLLFSLSLIVSCFAAQDPELVVQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRVYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAEEGEWMNWNWRSEGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTITAGVLTCRKGARC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1195 291 SUPERFAMILY Pectin lyase-like 34 148 IPR011050 -
Lele13g1195 291 SUPERFAMILY Pectin lyase-like 150 291 IPR011050 -
Lele13g1195 291 Gene3D - 149 284 IPR012334 -
Lele13g1195 291 Gene3D - 51 148 IPR012334 -
Lele13g1195 291 Pfam Pectate lyase 144 208 IPR002022 -
Lele13g1195 291 SMART amb_all 26 214 IPR002022 -
Lele13g1195 291 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lele13g1195 291 PANTHER PECTATE LYASE 18-RELATED 149 288 IPR045032 GO:0030570
Lele13g1195 291 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Lele13g1195 291 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Lele13g1195 291 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1195 Lele-ChrLele13 22449990 22451393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1195 150 291 Polysaccharide Lyase AT4G24780 83.803 1.35e-76 237