Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1187 ATGGCTTTGGCCTCTATGGGAAATAGCGCACCCAAGAAGTACGACGAAATCGATGCGGCACCGGAAGAGAGAGCCCGAGGGATCACGATCAACACCGCAACGGTTGAGTATGAAACTGAGAGCAGACACTACGCTCATGTGGATTGCCCCGGACATGCCGACTATGTGAAGAACATGATCACTGGTGCGGCGCAAATGGACGGCGCGATCTTGGTGGTTTCAGGCGCTGATGGGCCAATGCCTCAGACCAAAGAGCACATTCTGTTGGCGAAACAAGTGGGCGTGCCCAATATTGTGGTTTTCTTGAATAAACAGGACCAGGTTGATGATGAAGAGCTTCTTCAATTGGTGGAATTGGAAGTTCGGGAGCTCCTGACTCTGTATGAATTCCCGGGTGATGATGTGCCTATTGTTTCAGGTTCGGCATTGTTGGCATTAGAGGCATTGATGGCAAACCCCAAAATCAAGAGAGGAGAGGATCAGTGGGTGGATAAGATTTATGAATTGATGGATGCTGTTGATAGTTATATTCCAATTCCACAGCGACGAACTGATTTACCGTTTCTTATGGCGATTGAAGATGTGTTTTCGATTACTGGTCGTGGTACTGTGGCGACAGGGCGTGTTGAGAGGGGCACACTTAAGGTTGGGGACCCTGTAGATTTAGTGGGTTTTAAAGAAACACGTACAACAACAGTTACCGGGGTTGAAATGTTCCAAAAAACTCTTGACGAAGCGGTTGCAGGTGATAATGTGGGGCTTTTACTTAGGGGCATTCAGAAAACAGACGTTGAAAGAGGAATGGTTATTGCTAAACCCGGCGCCATTACGCCACATACGAAGTTCATTGCTATTGTGTATGTGCTGAGAAAGGAGGAGGGAGGTAGGCATTCACCATTTTTTGCTGGATACCGGCCTCAATTCTACATGAGGACTACTGATGTTACTGGGAAGGTATCTAAAATCATGAATGATAAGGATGAAGAGTCTAAGATGGTTATGCCTGGAGATCGTGTAAAGATGGTTGTAGAGCTAATTTTTCCTGTAGCCTGTGAAAAAGGAATGAGGTTTGCAATTAGAGAAGGTGGAAAGACTGTGGGAGCTGGAGTCATCCAGTCTATAATCGAATGA 1131 0.4642 MALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLTLYEFPGDDVPIVSGSALLALEALMANPKIKRGEDQWVDKIYELMDAVDSYIPIPQRRTDLPFLMAIEDVFSITGRGTVATGRVERGTLKVGDPVDLVGFKETRTTTVTGVEMFQKTLDEAVAGDNVGLLLRGIQKTDVERGMVIAKPGAITPHTKFIAIVYVLRKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSKIMNDKDEESKMVMPGDRVKMVVELIFPVACEKGMRFAIREGGKTVGAGVIQSIIE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1187 376 Pfam Elongation factor Tu domain 2 202 270 IPR004161 GO:0005525
Lele13g1187 376 Gene3D Translation factors 315 375 - -
Lele13g1187 376 Gene3D - 3 180 IPR027417 -
Lele13g1187 376 Pfam Elongation factor Tu GTP binding domain 12 178 IPR000795 GO:0003924|GO:0005525
Lele13g1187 376 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 181 IPR000795 GO:0003924|GO:0005525
Lele13g1187 376 PANTHER ELONGATION FACTOR TU-RELATED 8 375 - -
Lele13g1187 376 CDD EFTU_II 188 274 IPR033720 -
Lele13g1187 376 SUPERFAMILY Translation proteins 182 278 IPR009000 -
Lele13g1187 376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 196 IPR027417 -
Lele13g1187 376 PRINTS GTP-binding elongation factor signature 98 107 IPR000795 GO:0003924|GO:0005525
Lele13g1187 376 PRINTS GTP-binding elongation factor signature 61 72 IPR000795 GO:0003924|GO:0005525
Lele13g1187 376 PRINTS GTP-binding elongation factor signature 25 33 IPR000795 GO:0003924|GO:0005525
Lele13g1187 376 PRINTS GTP-binding elongation factor signature 45 55 IPR000795 GO:0003924|GO:0005525
Lele13g1187 376 CDD EFTU_III 277 371 - -
Lele13g1187 376 MobiDBLite consensus disorder prediction 1 20 - -
Lele13g1187 376 TIGRFAM EF-Tu: translation elongation factor Tu 2 376 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele13g1187 376 FunFam Elongation factor Tu 183 311 - -
Lele13g1187 376 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 18 33 IPR031157 -
Lele13g1187 376 Gene3D Translation factors 183 311 - -
Lele13g1187 376 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 276 375 IPR009001 -
Lele13g1187 376 Pfam Elongation factor Tu C-terminal domain 276 374 IPR004160 -
Lele13g1187 376 FunFam Elongation factor Tu 1 180 - -
Lele13g1187 376 FunFam Elongation factor Tu 315 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1187 Lele-ChrLele13 22414341 22415471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1187 4 374 Eukaryotic Initiation Factors Gene Family AT5G60390 30.348 1.27e-38 142