Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1175 ATGCTCTCTCTGCAATTCATCGCCCCGGAAGCTCTCGATCATCCTTTGCCATTTTTGCGGGGCAGCAATTCTTCCTCGTTTCGGGCCAACGATTGGTGCTTGCTCAAAGCGAGTCCTCCAATTAGTGGCAGAAAGAAGCTTCGATTCAATGTCGGAACTTTTAGGGTTTTGGCAATGTCTGAGAATTCTTCTACATTCAAGATGAATCTAAATGAGTATCTGGTCACTCTGGAGAAGCCACTTGGTATCCGGTTCGCTGTCACTGCTAACGGCAAAATCATCGTCCACTCCCTTAAGAAAGGGGGTAATGCAGAGAAGTCGAGAATTATAATGGTCGGGGACACTTTGAAGAAAGCTGGTGATTCATCGCAAAATAGGCTTGCTGAGATTAAGAACGTTGAAGATGCGCAGAATATTTTAAAGGAGAAGACTAATACTTTAAGCATGGTTCTTGAGAGATCCATATCTCCTTTTCCTATTCAACTGCTGCACAAGACAAATGATTCTGAATTACAATTCAATAGAGGTCAAGTTCCTATTGCCACCTGGAACAAGACATTATTGACTACAAATTTACAGCCATCTATTGAAAGTTTTGGGAATAGTGGTTTTTCTACCTTCAACTCAAAGTTTCTAACACCAAAAGGAAGCAAGTTATTGGGCAATCCAGATGAACATGTCATCCTCAATGAGGAGATAAAATTCTTTAGTGATGAAGAGTATGATGAAGGAGAGTGGGCTCATGGAAGTTTCCCACTTGAGGAATATGTCAAAGCTCTAGATCGTTCAAAAGGCGAGATGTACTATGATCACTCCCTTGGTATGCGCTATACTAAGATCTCAGAGCAAATACATGTGGGATCATGTATACAAACAGAAGCTGATGTGGAAACGTTGTCAAAAGTTGAGGGAATCACTGCTGTTCTGAACTTCCAAAGTGCAACTGAAGCTGAGAATTGGGGAATCGATTTCAGATCTATTAGTGAATCATGTCAAAGGAATAATATCCTTATGATCAACTATTCTATACGGGCGGGAGATTCTTATGATATGAGGAAGAAATTACCATTTTGTGTGGGGCTTCTCTTGCGGTTGCTGAGGAAAAACCATCGCGTTTTTGTTACATGCACTTCTGGATTTGATCGATCTCCTGCTTGTGTGATTGCATACCTGCACTGGATGACAGATCTTTCCCTTCATGCGGCTTATACATGGGTCACTGGGATGTACACATGCAGGCCTGACAGGCCGGCAATTGCCTGGGCAACATGGGATCTTATAGCTATGGTTGAAAAGGGTAACCATGATGGACCCCCTACACATGCTGTCACATTTGTATGGAATGAGAGTGAGGGACAGGATGTAAGATTGGTGGGAGATTTTACTGGAAATTGGAAAGAACCAATCAAAGCAATACACAAGGGCGGAATAAGATATGAAGCAGAAGTTAAACTTCCTCAAGGAAAGTACTACTACAAGTTTATTGTTAATGGAAACTGGAGGCATTCAAATGCTTCCCCGGCAGAAAGGGATGAAAGGGGGAACGTCAACAACGTAATTGTGATTGGTGATACTGCTAGTGTTAGGCCTTCTGTTCAACACCAGCCGAAAGATGCCAACGTTGTGAAAGTGATCGAGAGGCCTCTGGATGAAAAAGAGCGGTTTAAGCTGGCGAAAGCAGCTCGCTGCATTGCTTTCAATGTGTGTCCCATTACATTAGCTCCCAAGTCGCAAGTAGTCGCATAA 1746 0.4278 MLSLQFIAPEALDHPLPFLRGSNSSSFRANDWCLLKASPPISGRKKLRFNVGTFRVLAMSENSSTFKMNLNEYLVTLEKPLGIRFAVTANGKIIVHSLKKGGNAEKSRIIMVGDTLKKAGDSSQNRLAEIKNVEDAQNILKEKTNTLSMVLERSISPFPIQLLHKTNDSELQFNRGQVPIATWNKTLLTTNLQPSIESFGNSGFSTFNSKFLTPKGSKLLGNPDEHVILNEEIKFFSDEEYDEGEWAHGSFPLEEYVKALDRSKGEMYYDHSLGMRYTKISEQIHVGSCIQTEADVETLSKVEGITAVLNFQSATEAENWGIDFRSISESCQRNNILMINYSIRAGDSYDMRKKLPFCVGLLLRLLRKNHRVFVTCTSGFDRSPACVIAYLHWMTDLSLHAAYTWVTGMYTCRPDRPAIAWATWDLIAMVEKGNHDGPPTHAVTFVWNESEGQDVRLVGDFTGNWKEPIKAIHKGGIRYEAEVKLPQGKYYYKFIVNGNWRHSNASPAERDERGNVNNVIVIGDTASVRPSVQHQPKDANVVKVIERPLDEKERFKLAKAARCIAFNVCPITLAPKSQVVA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1175 581 CDD DSP_laforin-like 275 421 IPR045204 GO:0019203|GO:0046838
Lele13g1175 581 Gene3D Immunoglobulins 430 526 IPR013783 -
Lele13g1175 581 SUPERFAMILY PDZ domain-like 67 159 IPR036034 GO:0005515
Lele13g1175 581 Pfam Glycogen recognition site of AMP-activated protein kinase 443 524 IPR032640 -
Lele13g1175 581 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 268 408 IPR029021 -
Lele13g1175 581 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 61 574 - -
Lele13g1175 581 Gene3D Protein tyrosine phosphatase superfamily 269 534 IPR029021 -
Lele13g1175 581 CDD E_set_AMPKbeta_like_N 443 522 - -
Lele13g1175 581 Gene3D - 71 154 IPR036034 GO:0005515
Lele13g1175 581 ProSiteProfiles PDZ domain profile. 74 155 IPR001478 GO:0005515
Lele13g1175 581 SUPERFAMILY E set domains 440 523 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1175 Lele-ChrLele13 22316170 22321801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1175 139 577 Protein tyrosine phosphatase (PTP) family AT3G01510 65.778 0.0 617