Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1160 ATGGAAAAGGAGCGGAGACACAGAGGAAAAGGTTGCTATTGCAAGCTTACCCGTGATTCTCTTCATCTACCTAGTTGGTATCCATGTCTCAAGCTTATCTGGAGAGGAGACAGAGGCACGACGACGGAGTGTGAAACCACCACCGATGAAGCAAGAAGCATGTCGAAAGATGAAATAGAGAAGCTTCCTTGTTATAATTATGTAGCCAGAGGCAATGAAACTAGTACTGTAGAATGTGCGGTGTGCTTGGAGAATCTGGTTACAGGGGATAAGTGCAGATTATTGCATACATGCAAGCACAGTTTTCATGCTCACTGTTTGGATCAATGGCTTCTTCAGACACCCATTTGCCCTATTTACAGGGCTAGTGTTGGCTCTCAGAGGGAATGCTTTGCTCTAGATATTCCAGAAACTGGTTTTAAAATTCAGTCCACAGAGAATTCAACGCCAGAAGGGTAG 459 0.4444 MEKERRHRGKGCYCKLTRDSLHLPSWYPCLKLIWRGDRGTTTECETTTDEARSMSKDEIEKLPCYNYVARGNETSTVECAVCLENLVTGDKCRLLHTCKHSFHAHCLDQWLLQTPICPIYRASVGSQRECFALDIPETGFKIQSTENSTPEG 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1160 152 SMART ring_2 79 117 IPR001841 -
Lele13g1160 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 130 IPR013083 -
Lele13g1160 152 SUPERFAMILY RING/U-box 78 127 - -
Lele13g1160 152 Pfam Ring finger domain 78 119 IPR001841 -
Lele13g1160 152 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
Lele13g1160 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1160 Lele-ChrLele13 22241966 22243350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1160 50 124 C3H Transcription Factor Family AT1G74410 40.000 9.82e-15 67.0