Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1157 ATGATCATGAAATTTCGGACCGCCTTCGTCGCCCCAAATTCTAGGATTTTCGGTCGGGGCGAGCTGGTTACCGATCCCCGAGAAATTGCCAGACGCTACTTGAAGTCTGATTTTGTTATCGATCTGGCCGCAACGCTTCCACTGCCCCAGATTGTCATTTGGTTAGTGCTTCCATCGTCCTCGGCTGACCATGCCCACATCACTCTTGCTCTTTTCGTGCTTATTCAGTATGTTCCTCGACTGTTTCTTATCTTCCCGTTGAACAAACGTATTATCAAAACCTCTGGTGTTGTTGCCAAGACTCCATGGACTGGAGCTGCATATAATCTTCTACTCTACTTGCTAGCTAGTCATGTTATAGGAGCAACTTGGTATTTATCCGCGATAGCACGACAATTAAACTGTTGGACTGAAGAGTGCAGAGCGGAGAACCAATTACAAACCCTGTCTTGCCTTATAACTTATCTTGATTGCGCGAGTATGGTCAACCCTGATAGGCAATACTGGTTAAATGTCACCAACGTTGTTAAGAGTTGCGATGTAAAGAGCGGAGATAACAAATATTCTTTTGGGATGTTTCAAGATGCATTCAGGAAGGCAGTTGCTACTGGCAGTTTCGGTGAGAGATACTTCTATTGTCTTTGGTGGGGTATCAGAAATTTAAGCTCATATGGACAGAACTTGGACACCACTGTATTTATTGGGGAAACACTTTTTTCCATCGTGCTATGCATTGTTGGATTAGTTCTCTTTGCACTTTTGATTGGAAACATGCAGACATATTTAGAGTCAATGTCAGCAAGACTTGAAGAATGGAGGATTAGGAAGAGAGATACTGAGGAATGGATGAGGCATCGCCAGTTGCCTACAGATTTGCAGGAACGTGTCCGTCGCTTTGTTCAATATCAATGGCTTGCAACAAGAGGCGTCGATGAGAAATCCATTCTGCTTTCATTACCTCTGGATCTTCGTCATGAAATTCAACGCCACTTGTGTCTCGCCCTTGTTCGGCGTGTCCCCTTCTTTTCACAGATGGACGATCAACTGCTTGATGCCATTTGTGAACACCTTGTGTCGTCCCTAAGCACTGAAGGCACCTACACTTTTCGGGAGGGTGATCCGGTGAACGAAATGGTGTTCATCATCAGAGGGCAACTAGAGAGCTCCACCACTAATGGCGGAAGATCCGGGTTCTTTAACTCCATTACCCTCAGACCTGGAGATTTTTGCGGCGAGGAACTATTAACATGGGCCTTAATGCCAAACTCTAGCTCAAACCTGCCTTCTTCAACTCGAACCGTTAGGGCTCTTACTGAAGTTGAAGCTTTTGCGTTACAAGCATATGATCTCAAACGCGTGGCCGCTCAGTTCAAGCGCCTTCACAGTAAGAAACTTCAACATGCTTTTAGGTATTATTCCCATCAATGGAGGGCGTGGGCAGCTTGCTTAATAGAGGCTGCTTGGAGAAAGTATAAGAAACGCAAGGCATCTAGAGATTTATCTCTGAAAGAGGGTCTCTACTATATTGCAAGACCAGAGGAAAGAGCTAGTTACAGCGACCTGCTTGATTTGAAGGACTCGTCAGGGGACGCTGCAAATGGCACTCAAGCTCTTGGTACTACTGTTATGGCTTTCAAGTTTTCTGCAAATGCAAGGAAAGCGACTAATACTGGCCATAAAGGTAAAGGCAGTGATCCTGTGCCCCAGTTGTTCAAGCCTGATGAACCAGATTTCTCTGTGCTATAG 1746 0.453 MIMKFRTAFVAPNSRIFGRGELVTDPREIARRYLKSDFVIDLAATLPLPQIVIWLVLPSSSADHAHITLALFVLIQYVPRLFLIFPLNKRIIKTSGVVAKTPWTGAAYNLLLYLLASHVIGATWYLSAIARQLNCWTEECRAENQLQTLSCLITYLDCASMVNPDRQYWLNVTNVVKSCDVKSGDNKYSFGMFQDAFRKAVATGSFGERYFYCLWWGIRNLSSYGQNLDTTVFIGETLFSIVLCIVGLVLFALLIGNMQTYLESMSARLEEWRIRKRDTEEWMRHRQLPTDLQERVRRFVQYQWLATRGVDEKSILLSLPLDLRHEIQRHLCLALVRRVPFFSQMDDQLLDAICEHLVSSLSTEGTYTFREGDPVNEMVFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSSSNLPSSTRTVRALTEVEAFALQAYDLKRVAAQFKRLHSKKLQHAFRYYSHQWRAWAACLIEAAWRKYKKRKASRDLSLKEGLYYIARPEERASYSDLLDLKDSSGDAANGTQALGTTVMAFKFSANARKATNTGHKGKGSDPVPQLFKPDEPDFSVL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1157 581 MobiDBLite consensus disorder prediction 555 581 - -
Lele13g1157 581 Gene3D - 1 264 - -
Lele13g1157 581 ProSiteProfiles cAMP/cGMP binding motif profile. 341 471 IPR000595 -
Lele13g1157 581 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 578 - -
Lele13g1157 581 Gene3D Helix hairpin bin 265 332 - -
Lele13g1157 581 PRINTS EAG/ELK/ERG potassium channel family signature 254 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele13g1157 581 PRINTS EAG/ELK/ERG potassium channel family signature 210 227 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele13g1157 581 PRINTS EAG/ELK/ERG potassium channel family signature 304 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele13g1157 581 PRINTS EAG/ELK/ERG potassium channel family signature 1 10 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele13g1157 581 PRINTS EAG/ELK/ERG potassium channel family signature 236 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele13g1157 581 Gene3D Jelly Rolls 339 459 IPR014710 -
Lele13g1157 581 Pfam Ion transport protein 1 268 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele13g1157 581 SMART cnmp_10 341 472 IPR000595 -
Lele13g1157 581 SUPERFAMILY Voltage-gated potassium channels 1 263 - -
Lele13g1157 581 SUPERFAMILY cAMP-binding domain-like 270 466 IPR018490 -
Lele13g1157 581 CDD CAP_ED 341 472 IPR000595 -
Lele13g1157 581 FunFam Cyclic nucleotide-gated ion channel 1 339 457 - -
Lele13g1157 581 Pfam Cyclic nucleotide-binding domain 364 455 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1157 Lele-ChrLele13 22222467 22224736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1157 1 580 Ion Channels AT5G14870 67.337 0.0 842