Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1155 ATGTCAAGAAATGTGTATGAGTGGTTTTTCAACCACACCCATTTGAAGATGGCTTGGATTCCGCATAAAATTCAGGAAAAAGATGGGTATTTGAACTACCCACCACCAGTTTTGCCTTCGTATCCATCCCCATTCCCAGGTTCTATCCGCAACGAATCAACGTCTTCTTCGTCTTCACCTCCATCTGGTGTTGGCAGTAATAGAAATAGTCCGGCTGTTCTTTTCATTATAGTGATCCTCGCCGTGCTGTTCTTCGTATCTGGTCTGCTTCATCTTCTTGTCAGATTTCTCGCGAAGCACCCATCAGCTGGTCCATCTGCTCAATCTAATGGACACCAGGACGTTTCTGTCTCTGATGCTCTGCAGAGGCAGCTTCAACAACTTTTCCATCTCCATGACTCAGGCCTGGATCAAGCTTTCATTGACGCACTTCCTGTTTTCCAGTATAGAGAAATTGTGGGTTTGAAAGAACCATTTGACTGTGCTGTTTGTCTCTCTGAATTCTCTGAAAATGATAAGCTCAGGCTGCTTCCTACCTGCAGCCATGCTTTTCATATTGATTGCATAGACACCTGGCTCCTATCCAACTCGACATGTCCACTCTGCAGAGGAGCCCTGTTCGCCCCGGGACTCCCCGTGGAAAGCCCCATGTTTTATTTTGATGATCTGAGGGAAGAAGATGGGAGCCCTTGCACTGGAGAAGGTGGGGTAACTACCAGACAAAAAGCTGTGGAAATTGAAGAAATTGTAGAGAAAACGGTTCTCCCTGTGAGACTTGGTAAATTCAGAAGGCTTAATATGGATACAGGGGATAATGCAGGAGGAGAGACAAGTAGCAGTAATCTGGATGCGAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTGCTAGGCAACTCAGACCTGCGAATTACGTTGGACGGAGACAGAAAACTCTCCGAAGGGACGGAACAGACTGATAAGCTTTCAATGGAGGGTGATAAGGAAGCCAAAAAGATTACTAGTGTGAATAAGGGTGAGAGTTATTCTGTCTCAAAAATCTGGCTGTGGTCCAACAAGGGGAAGTTCTCAAGTTCTTCGAATGATCAAATGGGCATGCCATCTTCTCTCAGCACAGATTTACCATGGATGAGAACAACGGAAGGGACCTAA 1152 0.4566 MSRNVYEWFFNHTHLKMAWIPHKIQEKDGYLNYPPPVLPSYPSPFPGSIRNESTSSSSSPPSGVGSNRNSPAVLFIIVILAVLFFVSGLLHLLVRFLAKHPSAGPSAQSNGHQDVSVSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYREIVGLKEPFDCAVCLSEFSENDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGALFAPGLPVESPMFYFDDLREEDGSPCTGEGGVTTRQKAVEIEEIVEKTVLPVRLGKFRRLNMDTGDNAGGETSSSNLDARRCFSMGSYQYVLGNSDLRITLDGDRKLSEGTEQTDKLSMEGDKEAKKITSVNKGESYSVSKIWLWSNKGKFSSSSNDQMGMPSSLSTDLPWMRTTEGT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1155 383 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Lele13g1155 383 SMART ring_2 161 202 IPR001841 -
Lele13g1155 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 66 348 - -
Lele13g1155 383 FunFam RING-H2 finger protein ATL46 123 208 - -
Lele13g1155 383 SUPERFAMILY RING/U-box 140 208 - -
Lele13g1155 383 CDD RING-H2_PA-TM-RING 160 203 - -
Lele13g1155 383 Pfam Ring finger domain 160 203 IPR001841 -
Lele13g1155 383 MobiDBLite consensus disorder prediction 356 383 - -
Lele13g1155 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 207 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1155 Lele-ChrLele13 22208366 22209517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1155 88 360 C3H Transcription Factor Family AT2G18650 40.968 3.88e-55 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1155 13 22208366 22209517 Lele15g1302 15 7538995 7540146 hybridization
Lele13g1155 13 22208366 22209517 Lele16g1336 16 7605253 7606407 hybridization