Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1139 ATGGGACGGCGCATATATGATGTATCTGATTTTATGGCTTTACGCCAAATCAGGGTAACGGTCTTGATAGGGCCACGTAAGACGCGTGAAAAGGACGGGAAGTCCACTATGGATCTGTGGGAAACGTACAGTGACTTAACCAATCTACAAAGTGCTGTTTCTGAGCCAAAGATCTGCGGCGCTTTGACTATGGAGAGCTCGGACAAGGTGGTTGCTGTGATTATGGTGGGCGGACCCACCAAAGGGACAAGATTCCGGCCTCTTTCATTTAATATTCCTGAACCCCTTTTCCCACTGGCTGGTCAGCCAATGGTTCATCATTCCATTTCTGCTTGTAAAAGGATACCCAATTTGGCTCAAATATATCTGATAGGATTCTATGAGGAGCGAGACTTTGCACTTTATGTTTCTTCGATTTCAAGTGAGATGAAATTGCCAGTAAGATATTTGAAGGAAGAAAAACCACATGGTTCAGCTGGTGGCTTTTACTGCTTCAGAGATACTATCTTGGAAGACAACCCATCACATATCTTTCTTCTCAATTTTGATGTTTGCTGTAGTTTCCCTTTACCAGCCATGCTTGATGCCCATAAAAGATATGACGGAATGGGGACAATGTTAGTAATCAAGGTTTCTCCTGAATCTGCTAGTAAGTTTGGTGAGTTGGTGGCTGATCCTGTCACTAATGAATTGCTGCATTATACAGAGAAACCTGAGACTTTTGTCAGTGATTTGATAAATTGTGGTGTTTATGTGTTCACCCCTGATATATTTCATGCCATACAAAATGTATCCAATAATCGTGAAGACAGAGCTAATTTACGTCGAGTCTCCAGCTTTGAAGCACTCCAATTTTCCACCAGGACTCTTCCTACAGATTATGTAAGACTGGATCAAGATATTTTGTCGCCACTGGCTGGAAAGAAACAATTGTATACATATCAGACAACGGATTTTTGGGAGCAAATTAAAACTCCAGGAATGTCTCTAAAATGCTCAGAGTTGTATCTTGCACAATTCCGGTTTACTTCACCCCATCTTTTGGCCAGTGGAGATGGTAAAAAAAATGCTACAATTGTTGGTGATGTATATATTCATCCATCCGCAAAAGTACATCCGACTGCAAAGATGGGTCCCAATGTTTCTGTTTCAGCAAATGTTCGGGTTGGGTTTGGTGTTAGACTGATAAATTGTATTATCTTGGATGACGTTGAAATCAAGGAAAATGCTGTAGTTATAAATTCTATCATTGGATGGAAATCGTCAATTGGAAGATGGTCAACAGTGCAGGCTGACGGAGACTACAACGCCAAGCTTGGAATTACCATCCTCGGAGAAGCCGTGACAGTGGAGGATGAGGTTGTCGTGACCAATAGCATTGTTCTTCCCAATAAGACTCTGAATGTCGGGGTACAAGAGGAAATCATCTTATAA 1434 0.417 MGRRIYDVSDFMALRQIRVTVLIGPRKTREKDGKSTMDLWETYSDLTNLQSAVSEPKICGALTMESSDKVVAVIMVGGPTKGTRFRPLSFNIPEPLFPLAGQPMVHHSISACKRIPNLAQIYLIGFYEERDFALYVSSISSEMKLPVRYLKEEKPHGSAGGFYCFRDTILEDNPSHIFLLNFDVCCSFPLPAMLDAHKRYDGMGTMLVIKVSPESASKFGELVADPVTNELLHYTEKPETFVSDLINCGVYVFTPDIFHAIQNVSNNREDRANLRRVSSFEALQFSTRTLPTDYVRLDQDILSPLAGKKQLYTYQTTDFWEQIKTPGMSLKCSELYLAQFRFTSPHLLASGDGKKNATIVGDVYIHPSAKVHPTAKMGPNVSVSANVRVGFGVRLINCIILDDVEIKENAVVINSIIGWKSSIGRWSTVQADGDYNAKLGITILGEAVTVEDEVVVTNSIVLPNKTLNVGVQEEIIL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1139 477 SUPERFAMILY Trimeric LpxA-like enzymes 308 463 IPR011004 -
Lele13g1139 477 SUPERFAMILY Nucleotide-diphospho-sugar transferases 67 411 IPR029044 -
Lele13g1139 477 CDD M1P_guanylylT_A_like_N 72 336 - -
Lele13g1139 477 Pfam Nucleotidyl transferase 72 267 IPR005835 GO:0009058|GO:0016779
Lele13g1139 477 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 59 339 IPR029044 -
Lele13g1139 477 FunFam Putative GDP-mannose pyrophosphorylase 346 474 - -
Lele13g1139 477 Gene3D Hexapeptide repeat proteins 349 473 - -
Lele13g1139 477 FunFam Mannose-1-phosphate guanyltransferase alpha 69 340 - -
Lele13g1139 477 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 71 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1139 Lele-ChrLele13 22097878 22102332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1139 64 417 Eukaryotic Initiation Factors Gene Family AT2G34970 21.212 9.97e-07 49.3