Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1135 ATGAGAGCAAACTTCAACACGAGGGATTGCTCTTCAGTTTTCGAAAATTTACTTGTTGATCTGCTTGCTCTTTCCGCAGCATATTTTCCTGAGAAAATCTACCAACTGAAAGATATGAAGAGAACTAGGGACGATGCTTATGCTTCTTCTCAATTAAAGCGACCCATGGGGTCTTCACGTGGGGATTCCTATGGCCAATCCCAAAGCCCTGGAGGAGGAGGAGGAGGAGGAGGAGTGGGAGGGGGAGCTACTTCACAGAAGCTGACTACCAATGATGCTTTATCATATTTGAAGGAAGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACATGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAACTATTCAAAGGGCACAATAACTTGATTTTTGGATTTAACACCTTCTTGCCAAAGGGGTATGAGATTACACTGGATGAGGATGAGGCTCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCTATAAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAGTGAGGTTGCTACCCTTTTTGAGGACCACCTGGATTTACTTGAGGAGTTTACTAGATTCTTACCAGATACTTCTGCAGCTCCTTCGACACAGCATGCTTCTTATGGTCGAAATGCATTTCCACGTTTTACTGAGCGAGGTTCTACAGCACCCATGATACGGCCAATGCAAGTGGACAAGCAACGCTATCGACGAGAAAGGCTTAATTCTCATGATTTTGATCCAAGTGTTGACCGTCCTGAACTGGATGATGACAAGGCAGTAATGAAATCTCACAAGGAGCAGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCGTGACCAGGATGACAGAGAACCTGATCATGATAATAACAGGGATTTTAAGTCACGATTTTCTAACAAAAAGATATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCAGCTGATTTTGCTTCTTATGATGACAAAGATACCTTAAAGAGCATGTATAACCAAGCATTCAGTTTTTGTGAGAAAGTTAAGGAACAGTTGGGCAGTTCAGATGATTACCAGGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTTGGAAAGTACCCTGATCTGATGGATGAATTCAATGAATTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTATGCGGTGATGGTCAATTATCCAGAACATTAAAGTTGGAGGACAAAGACAAAGACCAGAAGCGTGAGATTAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGAAAATCCATTCAAGAACTGGACTTAAGTAACTGTCAACTTTGTACTCCAAGCTATCGTCTTCTGCCAGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGTTCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAATCTGTAAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAATTTAAGGTGCATTGAACGCCTGTATGGAGATCATGGACTTGATGTCCTGGACATATTACGAAAAAATCCAACTCATGCACTTCATGTGATATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCACCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGATCGCTAAATGTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAGCAGAAAGAGTATGATATTCTTCAGGCTATCGCTTCTGGAAATAAACAGCCTCTAATCCCCCATATGGAGTTTGAATATTCGGATTTTGGGATTCATGAGGACCTATACAAACTTATTCGTTATTCATGTGAGGAGGTCTTCTCAAGTAAAGATATGTCAACTAAAATTATGAGACTTTGGACTACCTTTTTGGAGCTGATACTTGGTGTTCCCTCTCATACTCATGGGTTAGAAAATTTGGAGGACAGGAAAACTGGGCAACGTGTTGCATCAAATACAGGAGGCGATGGAAACTCCCACGGAGACTCTATTCTAATGAATTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGGGTAAATGAGGCAAAGAATGGTCAACAGACTAGTTTAGCAGCCAATGACAAAGAAAATGGACCTGTTGACTGTGACCGTGCTTATAGAGGTGATCCTCTAAGGGATAAAGGGAAGAACGATGCAGATGGTAGTGAAAAAATCTCTGGGTGGAGTAAGCAGATTGCTACGGATGAGCAGTCAACTATCGATAATACTTCATTTGCAGTTAGAGGAGAAACTAGCATGACCAAGACCAGCTTAGAAATTACTTCAGGCTTTGTGCTTAATCCAGCAAGACCAACTACTACACTAGGCGGTGATGATGGTGTTGCCATTTCTCAGGGTGGTAATGGACCTTTGATGGAGGGACAGGATATTGTTCCTCCACTTCCATTAGCCAATGGAGTGCTAATTGAAAGCACTAAAGTCAAAAGCCATAAAGAACCTGCTGGACCGTACAAAGCTGAAAAGGAGGAGGGTGAATTATCACCCAATGCTGACTCAGAGGAGGATAATTTTGTTGGGTATGGAGACTCCAGTGGGCAGGCACTGCCTAAGTCAAAACATAATATTGAAAGAGGAAATTATAAATCTAGAAATCGGGAGGAAGAATGCTGTCCAGAGGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGACAGTGACAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGTAGTGAGTCTGCTGGGGATGCATGCTCTCGAGAAGAGCATGAGGAGGATGAAGATATGGAATGTGATGATGTTGAGGGTAAGGGTGAGAGTGAAGGCGAAGCTGAGGGAATGTGTGATGCACAATCCGCTGGAGGAGAGGGCTCTTCATTACCATTATCAGAAAGGTTCCTTTTGTCTGTTAAGCCTCTCACAAAGCGTGTTTCCGCAGTTTCACTTGTTGGGGAAAGAAATAATTCCAGGGTCTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATACTTTATGAAAGGATCTCATTAGCGAAAAAATATTCAACGAGTGCTGAAACAAAATGGAAAGCAACAAAGGAGGCTTCTTCCCCTGATCCTTATTCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAACGGAAAGTTTGAAGATGAGTGCCGAGCAATTATTGGAAACCAGTCATATATATTATTCACATTGGACAAGTTGATATATAAGTTGGTCAGACAGCTTCAAACAGTTGTAACGGATGAGATAGACAATAGGCTTCTCCAGTTGTATGAGTATGAAAAGTCGCGGAAACCTGGGTACTTGATCGATTCAGTCTATTATGCAAATGCACGTGTCATCCTTCATGATGAGAATATATATCGTTTTGAATGTTCATGTATTCCCTCGCAAGTGTTCATTCAGCTGATGGACTATATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATTGATCCAAATTTTTCCTTTTATCTGTATAATGATTTTCTGTCTGTCTCTCCTGGGAAAAAGGAACCCCACGGCATTATACTGCAAAGAAACAAGTGCGGATATGGAGATCTTGATGAACTTACATCTATGTGCTTAGCCATGGAAGGTGTTAAAATAATCAATGGATTGGAATGTAAGATAGCTTGCAACTCGTCCAAGATCTCCTATGTTCTGGACACGGAAGACTATTTCTTCCGCCCCAAAAGGCAAAGAAGAACATCATCAGGGACCACATCTTCCCGGCATCATCGAGATAGACAGGAAAGATTTCTCAAATTCTTATCAGTTTCATAA 4266 0.4093 MRANFNTRDCSSVFENLLVDLLALSAAYFPEKIYQLKDMKRTRDDAYASSQLKRPMGSSRGDSYGQSQSPGGGGGGGGVGGGATSQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHLDLLEEFTRFLPDTSAAPSTQHASYGRNAFPRFTERGSTAPMIRPMQVDKQRYRRERLNSHDFDPSVDRPELDDDKAVMKSHKEQRKRVDKESRDRKIRDQDDREPDHDNNRDFKSRFSNKKISVKKAEGFGLAADFASYDDKDTLKSMYNQAFSFCEKVKEQLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLCGDGQLSRTLKLEDKDKDQKREINGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRLLPEDYPIPVASQRSELGSQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNSINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVLDILRKNPTHALHVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLIAKCLVAEIKEKKAKQQKEYDILQAIASGNKQPLIPHMEFEYSDFGIHEDLYKLIRYSCEEVFSSKDMSTKIMRLWTTFLELILGVPSHTHGLENLEDRKTGQRVASNTGGDGNSHGDSILMNSRLPKSDNEVDGRVNEAKNGQQTSLAANDKENGPVDCDRAYRGDPLRDKGKNDADGSEKISGWSKQIATDEQSTIDNTSFAVRGETSMTKTSLEITSGFVLNPARPTTTLGGDDGVAISQGGNGPLMEGQDIVPPLPLANGVLIESTKVKSHKEPAGPYKAEKEEGELSPNADSEEDNFVGYGDSSGQALPKSKHNIERGNYKSRNREEECCPEAGGDNGADADDEDSDNVSEAGEDVSGSESAGDACSREEHEEDEDMECDDVEGKGESEGEAEGMCDAQSAGGEGSSLPLSERFLLSVKPLTKRVSAVSLVGERNNSRVFYGNDDFFVLFRLHQILYERISLAKKYSTSAETKWKATKEASSPDPYSRFMNALYNLLDGSADNGKFEDECRAIIGNQSYILFTLDKLIYKLVRQLQTVVTDEIDNRLLQLYEYEKSRKPGYLIDSVYYANARVILHDENIYRFECSCIPSQVFIQLMDYMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIILQRNKCGYGDLDELTSMCLAMEGVKIINGLECKIACNSSKISYVLDTEDYFFRPKRQRRTSSGTTSSRHHRDRQERFLKFLSVS 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1135 1421 ProSiteProfiles PAH domain profile. 170 240 IPR003822 GO:0006355
Lele13g1135 1421 SUPERFAMILY PAH2 domain 82 155 IPR036600 GO:0006355
Lele13g1135 1421 MobiDBLite consensus disorder prediction 965 1107 - -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 1069 1087 - -
Lele13g1135 1421 ProSiteProfiles PAH domain profile. 86 156 IPR003822 GO:0006355
Lele13g1135 1421 FunFam Paired amphipathic helix SIN3-like protein 169 240 - -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 52 70 - -
Lele13g1135 1421 FunFam Paired amphipathic helix protein SIN3 369 443 - -
Lele13g1135 1421 PANTHER SIN3B-RELATED 85 1284 IPR039774 GO:0003714
Lele13g1135 1421 MobiDBLite consensus disorder prediction 797 821 - -
Lele13g1135 1421 FunFam Paired amphipathic helix protein Sin3 92 154 - -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 241 342 - -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 1037 1051 - -
Lele13g1135 1421 Gene3D Paired amphipathic helix 370 443 IPR036600 GO:0006355
Lele13g1135 1421 MobiDBLite consensus disorder prediction 922 941 - -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 965 986 - -
Lele13g1135 1421 Pfam Sin3 family co-repressor 509 599 IPR013194 -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 833 847 - -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 45 84 - -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 274 342 - -
Lele13g1135 1421 Gene3D Paired amphipathic helix 92 154 IPR036600 GO:0006355
Lele13g1135 1421 MobiDBLite consensus disorder prediction 787 891 - -
Lele13g1135 1421 MobiDBLite consensus disorder prediction 1014 1032 - -
Lele13g1135 1421 Gene3D Paired amphipathic helix 169 241 IPR036600 GO:0006355
Lele13g1135 1421 Pfam C-terminal domain of Sin3a protein 1140 1388 IPR031693 -
Lele13g1135 1421 SUPERFAMILY PAH2 domain 167 239 IPR036600 GO:0006355
Lele13g1135 1421 SMART hdac_interact2seq4b 505 605 IPR013194 -
Lele13g1135 1421 ProSiteProfiles PAH domain profile. 372 441 IPR003822 GO:0006355
Lele13g1135 1421 SUPERFAMILY PAH2 domain 375 441 IPR036600 GO:0006355
Lele13g1135 1421 Coils Coil 701 721 - -
Lele13g1135 1421 Pfam Paired amphipathic helix repeat 394 438 IPR003822 GO:0006355
Lele13g1135 1421 Pfam Paired amphipathic helix repeat 193 237 IPR003822 GO:0006355
Lele13g1135 1421 Pfam Paired amphipathic helix repeat 109 153 IPR003822 GO:0006355
Lele13g1135 1421 MobiDBLite consensus disorder prediction 850 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1135 Lele-ChrLele13 22073172 22083875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1135 75 189 WRKY Transcription Factor Family AT4G12020 50.862 5.05e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele13g1135 Sin3a_C 5.3e-53 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1135 13 22073172 22083875 Lele15g1324 15 7657841 7668652 hybridization
Lele13g1135 13 22073172 22083875 Lele16g1356 16 7726811 7739114 hybridization