Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1127 ATGGACGAGACACTTGGAAATAAAAATGCCGAGAACATCGATTCTGATTCTCGCGTTTGCTCCCTCCAAGAGCCTAGCTTTAGCAAGATGAGCAATAATATCAATGCTGAGTCACACAGCAGCACCGAATCCAACAGTTATGATGAAAGTTACAAGAGCAGCTCTAGTTGTGACGCCAATGATTCATCAAGTCGTAGGAGCTTTTGCCCTTGCAAGCCTCACAAGGGCAACGATATTCGATGGGATGCAATACAGTTCGTGAAAGCTAAGTACGGTGATTTGGGTTTGGGACATTTCAGGCTGTTGAAGAAGCTGGGTTTTGGGGACATTGGAAGCGTTTATCTGGCCGAGCTTAAAGGGAAGGGTTGTCTCTTCGCAATGAAGGTCATGGATAAGGAAAAGTTAACTGCAAGGAGGAAAATGTCCAGAGTCCAGACTGAGAGGGACATTTTGAGTTCCTTGGACCACCCTTTCCTTCCCACCCTTTATTCTCATTTCCAAACAGAGAAATTCTCTTGCTTGCTTATGGAGTTCTGCAATGGTGGTGATCTTCACGTCCTCCGCCAGCGCCGACCAGGCAAGCATTTCACAGAGCAAGCTGCAAGGTTTTACGTTTCTGAAGTTCTTCTTGCTCTTGAGTATCTCCACATGATGGGGGTGGTGTACAGGGACTTGAAGCCTGAGAATGTACTAGTTCGTGAGGATGGTCATATCATGCTCTCTGATTTTGATCTATCGTTAAGATGTTATGTAAGACCCACCCTTGTTCAGTCCAACGAAGAACCGTCTCGTCAAGTTTCTTCCTACTATGTCGAGCCATCATCTTCTTGCATAGACCCATCTTGCAAGCTACCTGTTTGTGTGGAGGCTTCATGCTTGAAATTGCAGCCTTCTTGCTTCAAACCCCATGTTTTCAATTCCAAAAAGACCAAATCAAAGAGTACTGTTAAACAAAATTCAACGAATCCAGATTCATATCCTATGCTTATTGCTGAGCCAACCAACGCTCGCTCTATGTCATTTGTTGGGACTCATGAATATCTGGCCCCAGAGATTATAAGAGGCGATGGTCATGGGAGTGCTGTGGATTGGTGGACGTTTGGTATTTTCTTGTATGAGTTGTTGCATGGGAAGACACCATTTAAGGGCAATGGAAACAGAGAAACATTGTTCAATGTTGTTGGGCAGCCTCTTAAGTTTCCTGAAGGACCATCAAACATCAGTTTAGTTGCTAAGGATTTAATAAGAGGATTGCTTGTGAAAGACCCAAAGAAGAGGCTTGGGTTTCAGAGAGGTGCCTCTGAGATCAAACAACATGCTTTCTTCCAAAGTGTTAATTGGGCTCTGGTTCGTAGTAACCAACCCCCACTGATCCCAAAACCACTTGATCTTGCAGTTTTGAATGAGACTTTGAAGCTGTCAGCGCCTGTTAATGACGACAAAGGAAACTCTGATAAATCCAATAGGTCTTCAGGTCCTTACTTGGACTTCTGGCACTTTCTCTCAGTTTCCTCTGTATTCTCCCTGATCTCTCCGTTTCTTCAATTCGATTGCGGAACTCGGTCGAAGACAAGAGCACTGCCTAAATTGAACAAAGAACGTTCTTCAGTGGCGGTTGATCCTAGTCGGGTCACTCAACTCTCATGGCGCCCTAGAGCCTTTCTATACAAGGGATTCTTGACTGAGGAAGAATGTGACCATTTGATCGTTCTGGCGAAGGATAAGCTAGAAAAGTCTATGGTGGCGGATAATGAGTCAGGCAAAAGTGTAGAGAGTTCAGTCAGAACAAGTTCTGGAATGTTTCTTGAAAGTGCCCAGGATGACATAGTTTCCCTCATTGAAGAAAGACTTGCTGCATGGACCTTCCTTCCAATAGAGAATGGCGAGCCTATTCAAATATTGCACTATGAGAATGGTCAGAAGTATGAGCCACATTTTGATTTTTTTCACGACGAGGTTAACCAAAGAATGGGTGGCCATCGGGTGGCCACCGTGCTGATGTATTTGTCCAACGTTGAGAAGGGCGGGGAGACAATTTTTCCCAATTCCGAGGAAAAGTCTTCCCAGCCAAAGGATGAGAATTGGTCTGAATGTGCTCACAGAGGCTATGCAGTAAAACCTGAAAAGGGAGATGCCTTGCTGTTCTTCAGCCTTCGTCCAGATGCGATGACAGATACTAGCAGCTTGCATGGAAGCTGCCCGGTAATAAAGGGGGAGAAGTGGTCGGCGACAAAGTGGATACATGTGGCGGACTATAGTAAACCAATAAGAAAGGGAAGTGATTCTGGAAAATGTGTGGATGAGAATGAGAATTGCGCAGAGTGGGCTAAGAGAGGTGAATGTGAGAAGAACCCTCTTTATATGGTTGGAAGTGATGCAGGCGGAGGATATTGCAGGAAGAGTTGCAATGTCTGCTCTTCTTAG 2424 0.4501 MDETLGNKNAENIDSDSRVCSLQEPSFSKMSNNINAESHSSTESNSYDESYKSSSSCDANDSSSRRSFCPCKPHKGNDIRWDAIQFVKAKYGDLGLGHFRLLKKLGFGDIGSVYLAELKGKGCLFAMKVMDKEKLTARRKMSRVQTERDILSSLDHPFLPTLYSHFQTEKFSCLLMEFCNGGDLHVLRQRRPGKHFTEQAARFYVSEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCYVRPTLVQSNEEPSRQVSSYYVEPSSSCIDPSCKLPVCVEASCLKLQPSCFKPHVFNSKKTKSKSTVKQNSTNPDSYPMLIAEPTNARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLHGKTPFKGNGNRETLFNVVGQPLKFPEGPSNISLVAKDLIRGLLVKDPKKRLGFQRGASEIKQHAFFQSVNWALVRSNQPPLIPKPLDLAVLNETLKLSAPVNDDKGNSDKSNRSSGPYLDFWHFLSVSSVFSLISPFLQFDCGTRSKTRALPKLNKERSSVAVDPSRVTQLSWRPRAFLYKGFLTEEECDHLIVLAKDKLEKSMVADNESGKSVESSVRTSSGMFLESAQDDIVSLIEERLAAWTFLPIENGEPIQILHYENGQKYEPHFDFFHDEVNQRMGGHRVATVLMYLSNVEKGGETIFPNSEEKSSQPKDENWSECAHRGYAVKPEKGDALLFFSLRPDAMTDTSSLHGSCPVIKGEKWSATKWIHVADYSKPIRKGSDSGKCVDENENCAEWAKRGECEKNPLYMVGSDAGGGYCRKSCNVCSS 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1127 807 SMART ShkT_1 764 806 IPR003582 -
Lele13g1127 807 SMART p4hc 551 748 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lele13g1127 807 PANTHER FLIPPASE KINASE 1-RELATED 29 464 - -
Lele13g1127 807 FunFam Prolyl 4-hydroxylase 4 543 749 - -
Lele13g1127 807 Gene3D Phosphorylase Kinase; domain 1 97 182 - -
Lele13g1127 807 Gene3D Transferase(Phosphotransferase) domain 1 335 460 - -
Lele13g1127 807 ProSiteProfiles Protein kinase domain profile. 99 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1127 807 Gene3D Transferase(Phosphotransferase) domain 1 183 254 - -
Lele13g1127 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Lele13g1127 807 FunFam serine/threonine-protein kinase D6PK-like 183 250 - -
Lele13g1127 807 SMART serkin_6 99 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1127 807 Pfam 2OG-Fe(II) oxygenase superfamily 632 748 IPR044862 -
Lele13g1127 807 FunFam Serine/threonine-protein kinase D6PK-like 97 182 - -
Lele13g1127 807 ProSiteProfiles ShKT domain profile. 765 805 IPR003582 -
Lele13g1127 807 MobiDBLite consensus disorder prediction 1 49 - -
Lele13g1127 807 FunFam serine/threonine-protein kinase D6PK-like 336 460 - -
Lele13g1127 807 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 627 749 IPR005123 -
Lele13g1127 807 SUPERFAMILY Protein kinase-like (PK-like) 96 502 IPR011009 -
Lele13g1127 807 CDD STKc_phototropin_like 98 465 - -
Lele13g1127 807 Gene3D q2cbj1_9rhob like domain 543 749 - -
Lele13g1127 807 MobiDBLite consensus disorder prediction 10 49 - -
Lele13g1127 807 Pfam Protein kinase domain 100 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1127 807 Pfam Protein kinase domain 338 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1127 807 Gene3D - 755 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1127 Lele-ChrLele13 22016769 22021574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1127 48 500 AGC Kinase Gene Family AT5G40030 71.366 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lele13g1127 Pkinase 9.7e-39 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1127 13 22016769 22021574 Lele15g1333 15 7719570 7721596 hybridization
Lele13g1127 13 22016769 22021574 Lele16g1363 16 7773568 7778633 hybridization