Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1118 ATGGCAGAAAGTAGAGTTAGAATTACGTTACTGTTAATGGCTACCTTGGCCATTACAGTTCCATGCCTCGTAGACGCAAACATCGGAGAGTTCGACGAATATCTGATAGGAAAAGCTAAGGAGGCCAGGAGAGCGGCTCTTGAAGCATACGAACCGAACCCTTTGAGCGTCGCTTCAGAGCTTAATATGCACGTTCATCTGGCGATGAATGAGGCCAGCAAGGAGAACAACACGAGAGGGAGGAATCTGCAGGGGAAGAAAGGCGGAGAGTGCATGGCCACCAACCCAATCGACCGATGCTGGAGATGCGACAAAAACTGGGAGCAGAATCGCTTTAAGTTAGCCAAATGTGCGATGGGTTTCGGCCGCAAGACCACCGGCGGGTTGGGTGGTAAGATCTACGTCGTGAATGATTCTTCCGACGGAAACCTAACTGACCCGGAACCCGGAACTCTGAGGTACGGGGTGATTCAGAAGGAGCCATTGTGGATCATATTCAAGCACAGCATGGTGATCAAGTTCAAACAGGAGTTGATGGTGAATTCCCACAAGACAATCGACGGACGCGGAGCCAATATTCATATAAAGAACGGCGCCGGCATCACTGTGCAAATGGCTCAGAACGTCATCATCCACAACCTTCGCTTTCGCAATATCAGAGCTAGGAAGGGTGGCATGATAAGGGACTCCACGGACCATGTCGGGCTGAGAACCAGAAGCGACGGTGACGGCATCAGCATCTACGGTGCCACCAACATCTGGGTAGATCACGTTTCGATGTCCAACGCGGACGATGGGCTGATCGACGCCATCATGGGTTCTACCGCCATTACCATATCAAATTGCCACATGACCAAGCACAACGATGTGATGCTGTTCGGGGCTGGATCGAATTATCCTGAGGACAAGATAATGCAGGTAACGGTGGCGTTCAACCACTTCGGGAACGGGTTGGTACAGAGGATGCCGAGATGCAGATTTGGGTTCGTCCACGTGGTGAACAACGATTTTACTCACTGGCTCATGTACGCCATTGGAGGAAGCTCGGCCCCGACCATACTGAGCCAAGGAAACAGATTCAATGCTCCGAACAACAACGCGACGAAGGATATAACGAACAGGGTGGGAACGAAGCCGGAGGATTGGAAAGACTGGAAATGGAAATCTGAGCTGGACCAGTTGGATAACGGACCCGTTTTCGTTGAATCGGGAGGACCGTTAGCCTCCATCGACAGAAGCACTTTGATCCAACCAAGGCCTGGGATTGAAGCTCCAGTGCTTTCAAAATATTCGGGGGCGATGAGGTGCAAGATTGGCAAGCCTTGTTAA 1329 0.5124 MAESRVRITLLLMATLAITVPCLVDANIGEFDEYLIGKAKEARRAALEAYEPNPLSVASELNMHVHLAMNEASKENNTRGRNLQGKKGGECMATNPIDRCWRCDKNWEQNRFKLAKCAMGFGRKTTGGLGGKIYVVNDSSDGNLTDPEPGTLRYGVIQKEPLWIIFKHSMVIKFKQELMVNSHKTIDGRGANIHIKNGAGITVQMAQNVIIHNLRFRNIRARKGGMIRDSTDHVGLRTRSDGDGISIYGATNIWVDHVSMSNADDGLIDAIMGSTAITISNCHMTKHNDVMLFGAGSNYPEDKIMQVTVAFNHFGNGLVQRMPRCRFGFVHVVNNDFTHWLMYAIGGSSAPTILSQGNRFNAPNNNATKDITNRVGTKPEDWKDWKWKSELDQLDNGPVFVESGGPLASIDRSTLIQPRPGIEAPVLSKYSGAMRCKIGKPC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1118 442 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Lele13g1118 442 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Lele13g1118 442 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Lele13g1118 442 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Lele13g1118 442 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Lele13g1118 442 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Lele13g1118 442 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Lele13g1118 442 Pfam Pectate lyase 175 360 IPR002022 -
Lele13g1118 442 SMART amb_all 169 366 IPR002022 -
Lele13g1118 442 Gene3D - 94 434 IPR012334 -
Lele13g1118 442 SUPERFAMILY Pectin lyase-like 95 406 IPR011050 -
Lele13g1118 442 PANTHER PECTATE LYASE 18-RELATED 42 440 IPR045032 GO:0030570
Lele13g1118 442 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1118 Lele-ChrLele13 21915873 21921074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1118 8 442 Polysaccharide Lyase AT1G14420 51.893 2.85e-169 481