Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele13g1117 | ATGTCTGTAAGCTTAACCAATTCATATGAAGATTTGGATTCATCACCTGCTATATACCACTGTTTGTTTTCTCTTGATCTTGACTTGAATGCCAAGATGGACGGTCATCTCTTTAACAACATAGCTCTCGGTGGCCGTGGAGGCACCAATCCAGGGCAGATGAAAATATTTTCTGGAGGGATTTTATGGAAAAGACAGGGGGGCGGTAAAGCCATCGAGGTCGATAAGGCTGACATAATGGGAGTGACTTGGATGAAGGTCCCAAGAACTAACCAGCTTGGGGTTCGAATCAAAGATGGATTGTACTACAAGTTCACTGGGTTCCGTGACCAGGATATGGCCAGTTTGACTAGCTTTTTCCAAAATACATGTGGGATTACACCAGAGGAAAAGCATCTTTCTGTTAGTGGGCGTAATTGGGGAGACGTTGATCTAAATGGAAATATGCTGACTTTCATGGTTGGCTCAAAGCAAGCTTTTGAGCTGTCTTTAGCGGATGTCTCTCAAACACAGCTCCAAGGGAAAAATGAAGTGGCCTTGGAGTTTCATGTGGATGATACAACTGGAGCTAATGAGAAAGATTCTCTGATGGAAATAAGTTTTCACATACCAAATTCCAACACTCAATTTGTTGGTGATGAAAATTGTCCTCCTGCTCAGGTTTTCCGTGATAAAATCATGTCTATGGCAGACGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCTATTCTAACACCAAGGGGGCGGTACAATGTTGAATTACATATGTCATTCTTGCGGCTTCAAGGGCAGGCTAATGATTTCAAAATCCAGTACAGCAGTGTAGTTCGCCTATTTTTACTTCCCAAGTCAAATCAGCCACATACATTTGTCATTATTAGTCTTGATCCTCCCATTCGTAAAGGACAAACTTTGTACCCACACATTGTGATGCAGTTTGAAACTGATTACGTAGTTCAAAGCACCTTGTCAATGAGTGAAGATCTGTACAACAGCAAGTTCAAGGACAAGTTGGAGCTTTCATATAAGGGGCTCATCCATGAAGTTTTCACAACCATATTGCGTGGATTGTCTGGTGCTAAAGTTACCAAACCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCAGTGAAATCGTCTTTGAAAGCTGAAGATGGAATTTTGTATCCCCTCGAGAAGAGCTTCTTCTTTTTACCTAAACCTCCCACCCTCATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATACTGCTGGGGGTTCAAATATGCATTATTTTGACCTTCTTATTAGACTAAAAACTGAGCAAGAGCATCTATTCCGTAATATTCAGAGGAATGAATACCACAATCTTTTTGACTTTATCAGTTCAAAGGGCTTGAAAATTATGAACCTTGGAGGTGTCCAAGCCACTGATGGTGTTGCTGCTGTTCTTCAAGAAGATGATGATGATGCTGTTGATCCTCATCTTGAGCGCATAAAAAATGCAGCTGGCGGAGATGAGAGTGATGAAGAGGATGAGGATTTTGTTGCCGATGAGGATGATGGTGGTTCTCCAACTGATGATTCTGGAGATGAGTCTAATGCAAGTGAAGATGGTGGGAAAGAGAAGCCCGCCAAAAAGGAATCAAAGAAGGAACTGTCTTCTAAGGCATCTACTTCTAAGAAGAGATCTAAAGATGGAGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCTAATGCACCGAAGAGAGCATTGTCTGGTTTCATGTTCTTCTCCCAAATGGAGAGAGAGAATCTGAAGAAAAGCAATCCTGGAATTTCATTTACTGATGTGGGAAGAGTACTTGGGGAGAAATGGAAGAAGATGTCAGCGGATGAGAAGGAACCATATGAAGCTAAAGCTCGTGCAGATAAAAAACGTTACAAGGATGAGATCAGTGGGTACAAGAATCCGCAACCTATGAACGTAGACTCAGGAAATGAATCTGATAGTGCTTGA | 2013 | 0.4168 | MSVSLTNSYEDLDSSPAIYHCLFSLDLDLNAKMDGHLFNNIALGGRGGTNPGQMKIFSGGILWKRQGGGKAIEVDKADIMGVTWMKVPRTNQLGVRIKDGLYYKFTGFRDQDMASLTSFFQNTCGITPEEKHLSVSGRNWGDVDLNGNMLTFMVGSKQAFELSLADVSQTQLQGKNEVALEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSMSEDLYNSKFKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGVQATDGVAAVLQEDDDDAVDPHLERIKNAAGGDESDEEDEDFVADEDDGGSPTDDSGDESNASEDGGKEKPAKKESKKELSSKASTSKKRSKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKSNPGISFTDVGRVLGEKWKKMSADEKEPYEAKARADKKRYKDEISGYKNPQPMNVDSGNESDSA | 670 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele13g1117 | 670 | FunFam | FACT complex subunit SSRP1 | 127 | 210 | - | - | |
Lele13g1117 | 670 | Pfam | HMG (high mobility group) box | 586 | 654 | IPR009071 | - | |
Lele13g1117 | 670 | SMART | Rtt106_2 | 379 | 472 | IPR013719 | - | |
Lele13g1117 | 670 | MobiDBLite | consensus disorder prediction | 656 | 670 | - | - | |
Lele13g1117 | 670 | Gene3D | - | 32 | 123 | IPR011993 | - | |
Lele13g1117 | 670 | Pfam | Structure-specific recognition protein (SSRP1) | 137 | 205 | IPR024954 | - | |
Lele13g1117 | 670 | FunFam | FACT complex subunit SSRP1 | 570 | 663 | - | - | |
Lele13g1117 | 670 | FunFam | Fact complex subunit ssrp1 | 230 | 369 | - | - | |
Lele13g1117 | 670 | FunFam | FACT complex subunit SSRP1 | 370 | 479 | - | - | |
Lele13g1117 | 670 | MobiDBLite | consensus disorder prediction | 535 | 577 | - | - | |
Lele13g1117 | 670 | Gene3D | - | 370 | 478 | IPR011993 | - | |
Lele13g1117 | 670 | PRINTS | Structure-specific recognition protein signature | 431 | 447 | IPR000969 | GO:0003677|GO:0005634 | |
Lele13g1117 | 670 | PRINTS | Structure-specific recognition protein signature | 360 | 373 | IPR000969 | GO:0003677|GO:0005634 | |
Lele13g1117 | 670 | PRINTS | Structure-specific recognition protein signature | 387 | 405 | IPR000969 | GO:0003677|GO:0005634 | |
Lele13g1117 | 670 | PRINTS | Structure-specific recognition protein signature | 447 | 465 | IPR000969 | GO:0003677|GO:0005634 | |
Lele13g1117 | 670 | PRINTS | Structure-specific recognition protein signature | 405 | 422 | IPR000969 | GO:0003677|GO:0005634 | |
Lele13g1117 | 670 | PRINTS | Structure-specific recognition protein signature | 295 | 311 | IPR000969 | GO:0003677|GO:0005634 | |
Lele13g1117 | 670 | PRINTS | Structure-specific recognition protein signature | 272 | 288 | IPR000969 | GO:0003677|GO:0005634 | |
Lele13g1117 | 670 | PRINTS | Structure-specific recognition protein signature | 250 | 266 | IPR000969 | GO:0003677|GO:0005634 | |
Lele13g1117 | 670 | PANTHER | FACT COMPLEX SUBUNIT SSRP1 | 33 | 639 | - | - | |
Lele13g1117 | 670 | CDD | HMGB-UBF_HMG-box | 586 | 651 | - | - | |
Lele13g1117 | 670 | SMART | hmgende2 | 585 | 655 | IPR009071 | - | |
Lele13g1117 | 670 | Pfam | POB3-like N-terminal PH domain | 38 | 129 | IPR035417 | - | |
Lele13g1117 | 670 | Gene3D | - | 230 | 369 | - | - | |
Lele13g1117 | 670 | SUPERFAMILY | HMG-box | 573 | 655 | IPR036910 | - | |
Lele13g1117 | 670 | MobiDBLite | consensus disorder prediction | 507 | 534 | - | - | |
Lele13g1117 | 670 | SUPERFAMILY | PH domain-like | 237 | 471 | - | - | |
Lele13g1117 | 670 | MobiDBLite | consensus disorder prediction | 501 | 593 | - | - | |
Lele13g1117 | 670 | FunFam | FACT complex subunit SSRP1 | 32 | 124 | - | - | |
Lele13g1117 | 670 | MobiDBLite | consensus disorder prediction | 626 | 670 | - | - | |
Lele13g1117 | 670 | Pfam | Histone chaperone Rttp106-like | 381 | 470 | IPR013719 | - | |
Lele13g1117 | 670 | Gene3D | - | 128 | 210 | IPR038167 | - | |
Lele13g1117 | 670 | Gene3D | High mobility group box domain | 569 | 664 | IPR036910 | - | |
Lele13g1117 | 670 | CDD | PH2_SSRP1-like | 373 | 472 | - | - | |
Lele13g1117 | 670 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 586 | 654 | IPR009071 | - | |
Lele13g1117 | 670 | CDD | PH1_SSRP1-like | 238 | 371 | - | - | |
Lele13g1117 | 670 | MobiDBLite | consensus disorder prediction | 626 | 651 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele13g1117 | Lele-ChrLele13 | 21907969 | 21914872 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele13g1117 | 582 | 654 | ARID Transcription Factor Family | AT1G04880 | 41.096 | 7.18e-10 | 59.7 |