Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1117 ATGTCTGTAAGCTTAACCAATTCATATGAAGATTTGGATTCATCACCTGCTATATACCACTGTTTGTTTTCTCTTGATCTTGACTTGAATGCCAAGATGGACGGTCATCTCTTTAACAACATAGCTCTCGGTGGCCGTGGAGGCACCAATCCAGGGCAGATGAAAATATTTTCTGGAGGGATTTTATGGAAAAGACAGGGGGGCGGTAAAGCCATCGAGGTCGATAAGGCTGACATAATGGGAGTGACTTGGATGAAGGTCCCAAGAACTAACCAGCTTGGGGTTCGAATCAAAGATGGATTGTACTACAAGTTCACTGGGTTCCGTGACCAGGATATGGCCAGTTTGACTAGCTTTTTCCAAAATACATGTGGGATTACACCAGAGGAAAAGCATCTTTCTGTTAGTGGGCGTAATTGGGGAGACGTTGATCTAAATGGAAATATGCTGACTTTCATGGTTGGCTCAAAGCAAGCTTTTGAGCTGTCTTTAGCGGATGTCTCTCAAACACAGCTCCAAGGGAAAAATGAAGTGGCCTTGGAGTTTCATGTGGATGATACAACTGGAGCTAATGAGAAAGATTCTCTGATGGAAATAAGTTTTCACATACCAAATTCCAACACTCAATTTGTTGGTGATGAAAATTGTCCTCCTGCTCAGGTTTTCCGTGATAAAATCATGTCTATGGCAGACGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCTATTCTAACACCAAGGGGGCGGTACAATGTTGAATTACATATGTCATTCTTGCGGCTTCAAGGGCAGGCTAATGATTTCAAAATCCAGTACAGCAGTGTAGTTCGCCTATTTTTACTTCCCAAGTCAAATCAGCCACATACATTTGTCATTATTAGTCTTGATCCTCCCATTCGTAAAGGACAAACTTTGTACCCACACATTGTGATGCAGTTTGAAACTGATTACGTAGTTCAAAGCACCTTGTCAATGAGTGAAGATCTGTACAACAGCAAGTTCAAGGACAAGTTGGAGCTTTCATATAAGGGGCTCATCCATGAAGTTTTCACAACCATATTGCGTGGATTGTCTGGTGCTAAAGTTACCAAACCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCAGTGAAATCGTCTTTGAAAGCTGAAGATGGAATTTTGTATCCCCTCGAGAAGAGCTTCTTCTTTTTACCTAAACCTCCCACCCTCATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATACTGCTGGGGGTTCAAATATGCATTATTTTGACCTTCTTATTAGACTAAAAACTGAGCAAGAGCATCTATTCCGTAATATTCAGAGGAATGAATACCACAATCTTTTTGACTTTATCAGTTCAAAGGGCTTGAAAATTATGAACCTTGGAGGTGTCCAAGCCACTGATGGTGTTGCTGCTGTTCTTCAAGAAGATGATGATGATGCTGTTGATCCTCATCTTGAGCGCATAAAAAATGCAGCTGGCGGAGATGAGAGTGATGAAGAGGATGAGGATTTTGTTGCCGATGAGGATGATGGTGGTTCTCCAACTGATGATTCTGGAGATGAGTCTAATGCAAGTGAAGATGGTGGGAAAGAGAAGCCCGCCAAAAAGGAATCAAAGAAGGAACTGTCTTCTAAGGCATCTACTTCTAAGAAGAGATCTAAAGATGGAGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCTAATGCACCGAAGAGAGCATTGTCTGGTTTCATGTTCTTCTCCCAAATGGAGAGAGAGAATCTGAAGAAAAGCAATCCTGGAATTTCATTTACTGATGTGGGAAGAGTACTTGGGGAGAAATGGAAGAAGATGTCAGCGGATGAGAAGGAACCATATGAAGCTAAAGCTCGTGCAGATAAAAAACGTTACAAGGATGAGATCAGTGGGTACAAGAATCCGCAACCTATGAACGTAGACTCAGGAAATGAATCTGATAGTGCTTGA 2013 0.4168 MSVSLTNSYEDLDSSPAIYHCLFSLDLDLNAKMDGHLFNNIALGGRGGTNPGQMKIFSGGILWKRQGGGKAIEVDKADIMGVTWMKVPRTNQLGVRIKDGLYYKFTGFRDQDMASLTSFFQNTCGITPEEKHLSVSGRNWGDVDLNGNMLTFMVGSKQAFELSLADVSQTQLQGKNEVALEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSMSEDLYNSKFKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGVQATDGVAAVLQEDDDDAVDPHLERIKNAAGGDESDEEDEDFVADEDDGGSPTDDSGDESNASEDGGKEKPAKKESKKELSSKASTSKKRSKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKSNPGISFTDVGRVLGEKWKKMSADEKEPYEAKARADKKRYKDEISGYKNPQPMNVDSGNESDSA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1117 670 FunFam FACT complex subunit SSRP1 127 210 - -
Lele13g1117 670 Pfam HMG (high mobility group) box 586 654 IPR009071 -
Lele13g1117 670 SMART Rtt106_2 379 472 IPR013719 -
Lele13g1117 670 MobiDBLite consensus disorder prediction 656 670 - -
Lele13g1117 670 Gene3D - 32 123 IPR011993 -
Lele13g1117 670 Pfam Structure-specific recognition protein (SSRP1) 137 205 IPR024954 -
Lele13g1117 670 FunFam FACT complex subunit SSRP1 570 663 - -
Lele13g1117 670 FunFam Fact complex subunit ssrp1 230 369 - -
Lele13g1117 670 FunFam FACT complex subunit SSRP1 370 479 - -
Lele13g1117 670 MobiDBLite consensus disorder prediction 535 577 - -
Lele13g1117 670 Gene3D - 370 478 IPR011993 -
Lele13g1117 670 PRINTS Structure-specific recognition protein signature 431 447 IPR000969 GO:0003677|GO:0005634
Lele13g1117 670 PRINTS Structure-specific recognition protein signature 360 373 IPR000969 GO:0003677|GO:0005634
Lele13g1117 670 PRINTS Structure-specific recognition protein signature 387 405 IPR000969 GO:0003677|GO:0005634
Lele13g1117 670 PRINTS Structure-specific recognition protein signature 447 465 IPR000969 GO:0003677|GO:0005634
Lele13g1117 670 PRINTS Structure-specific recognition protein signature 405 422 IPR000969 GO:0003677|GO:0005634
Lele13g1117 670 PRINTS Structure-specific recognition protein signature 295 311 IPR000969 GO:0003677|GO:0005634
Lele13g1117 670 PRINTS Structure-specific recognition protein signature 272 288 IPR000969 GO:0003677|GO:0005634
Lele13g1117 670 PRINTS Structure-specific recognition protein signature 250 266 IPR000969 GO:0003677|GO:0005634
Lele13g1117 670 PANTHER FACT COMPLEX SUBUNIT SSRP1 33 639 - -
Lele13g1117 670 CDD HMGB-UBF_HMG-box 586 651 - -
Lele13g1117 670 SMART hmgende2 585 655 IPR009071 -
Lele13g1117 670 Pfam POB3-like N-terminal PH domain 38 129 IPR035417 -
Lele13g1117 670 Gene3D - 230 369 - -
Lele13g1117 670 SUPERFAMILY HMG-box 573 655 IPR036910 -
Lele13g1117 670 MobiDBLite consensus disorder prediction 507 534 - -
Lele13g1117 670 SUPERFAMILY PH domain-like 237 471 - -
Lele13g1117 670 MobiDBLite consensus disorder prediction 501 593 - -
Lele13g1117 670 FunFam FACT complex subunit SSRP1 32 124 - -
Lele13g1117 670 MobiDBLite consensus disorder prediction 626 670 - -
Lele13g1117 670 Pfam Histone chaperone Rttp106-like 381 470 IPR013719 -
Lele13g1117 670 Gene3D - 128 210 IPR038167 -
Lele13g1117 670 Gene3D High mobility group box domain 569 664 IPR036910 -
Lele13g1117 670 CDD PH2_SSRP1-like 373 472 - -
Lele13g1117 670 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 586 654 IPR009071 -
Lele13g1117 670 CDD PH1_SSRP1-like 238 371 - -
Lele13g1117 670 MobiDBLite consensus disorder prediction 626 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1117 Lele-ChrLele13 21907969 21914872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1117 582 654 ARID Transcription Factor Family AT1G04880 41.096 7.18e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele13g1117 POB3_N 1.2e-21 CL0266