Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1106 ATGGCCTTCCCTCCTTCTCACACTTTCATGTTTCACACCAATCACTCCCATGAAGATCATCATCATCATCACGACCCCCACCTCTCCTCATCTCCGTCTCTCAAATCCTTCCCTCCATTACCACCCCAACACTTTCAAACTCGGAGTGCACCTTTCATGGTGAAGAGATCGATGTCGTTTTCAGGGATAGAGAGCAGGTGCGATATGGAAGTGAATGAAGGTGATGATGATTTGTCGGATGATGGTTCGGTGCAGATAGGGGAGAAGAAGAAGAGGCTGAAGATGGAGCAGGTTAAGGCACTCGAGAAGAGCTTTGAGGTTGGAAACAAGCTTGAACCAGAGAGGAAACTAGAGCTGGCTAAGGCTTTGGATCTGCAGCCACGTCAGATCGCCATTTGGTTTCAGAACAGGAGAGCCCGATGGAAAACCAAGAACCTCGAGAAAGAATACGAATCCCTCAAGAAACAGTTCGAAGCTCTCAAGGCCGACAACGATGCTCTTAACCTTCAGAACCAGAAACTTCATGCAGAGTTACAAGCCCTGAAAGGACGAGACCGTCACCGTGAAGGAGGAACAGTGAGCCTGGTGAAGAAAGAAACGGAGGGCTCTTGGAGCAATAATAGAAGTGACAACAGCTCAGACATCAACTTGGACCTTTCAAGAACACCAGTTAGAAACAGTCCTGATTGTTGTCAGAACGGTAAAAGCCATCAGCTCGTTCTAGGCTCAAATCCAAAGCCCACCAGCATAACACAACTCCTCCAGTTCTCAACAAGATCAGACCTCCAAGACGAAACCTTCTCCAAGATGTTCAACACCACCATCGATGATCATCAGCAGCAGAACTTCTGGACCTGGCCTCACGAGCAGCACCAATTTCATTGA 885 0.4802 MAFPPSHTFMFHTNHSHEDHHHHHDPHLSSSPSLKSFPPLPPQHFQTRSAPFMVKRSMSFSGIESRCDMEVNEGDDDLSDDGSVQIGEKKKRLKMEQVKALEKSFEVGNKLEPERKLELAKALDLQPRQIAIWFQNRRARWKTKNLEKEYESLKKQFEALKADNDALNLQNQKLHAELQALKGRDRHREGGTVSLVKKETEGSWSNNRSDNSSDINLDLSRTPVRNSPDCCQNGKSHQLVLGSNPKPTSITQLLQFSTRSDLQDETFSKMFNTTIDDHQQQNFWTWPHEQHQFH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1106 294 Pfam Homeobox associated leucine zipper 144 184 IPR003106 GO:0006355|GO:0043565
Lele13g1106 294 FunFam Homeobox-leucine zipper protein ATHB-13 80 148 - -
Lele13g1106 294 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Lele13g1106 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 59 270 IPR045224 GO:0003700
Lele13g1106 294 MobiDBLite consensus disorder prediction 198 218 - -
Lele13g1106 294 SUPERFAMILY Homeodomain-like 81 146 IPR009057 -
Lele13g1106 294 Coils Coil 136 184 - -
Lele13g1106 294 Pfam Homeodomain 89 142 IPR001356 GO:0003677
Lele13g1106 294 MobiDBLite consensus disorder prediction 1 46 - -
Lele13g1106 294 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Lele13g1106 294 MobiDBLite consensus disorder prediction 182 218 - -
Lele13g1106 294 Gene3D - 83 153 - -
Lele13g1106 294 CDD homeodomain 89 145 IPR001356 GO:0003677
Lele13g1106 294 MobiDBLite consensus disorder prediction 12 29 - -
Lele13g1106 294 SMART HOX_1 87 148 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1106 Lele-ChrLele13 21846297 21848101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1106 1 287 Homeobox Transcription Factor Family AT5G15150 45.541 1.55e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele13g1106 Homeodomain 4.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1106 13 21846297 21848101 Lele15g1359 15 7882590 7884357 hybridization
Lele13g1106 13 21846297 21848101 Lele16g1391 16 7912446 7914229 hybridization