Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1096 ATGGGAAGGCCGCCTTGTTGTGACAGGGAAGGTGTCAAGAAAGGACCTTGGACGCCTGAAGAAGATATCTTATTGGTGTCATACATACAGCAACATGGCCCTGGAAATTGGAAGGCTGTTCCCACCAATACAGGGTTGTCGCGGTGCAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTGCGGCCAGGAATCAAGCGCGGCAGCTTCACAGACCAAGAAGAGAAGATGATCATCCATCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCGATAGCTTCGTACCTTCCTCAGAGAACAGACAACGACATAAAAAATCATTGGAACACCCACTTGAAGAAGAAGCTGAAGAAAATGCAGACGGGTGTTGAAGGGGAGAGCATGAGAGATGCGTTTTCAGCTTCGCACACAATGCCTCGAGGACAGTGGGAAAGAAGGCTCCAAAATGATATTAAAATGGCGAAGAGAGCTCTCCGCGAGGCACTGTCACCTCCTAAGCCTTCTGGCTCATTTCAATCCAACACCTCTAATACTACTGGCTCCTTTTCCACTTCTGCTAAACCAGCCCAGTCCTTATGCTATGCGTCGACTGCTGACAACATAGCTCGTTTGCTGAAGGAATGGAAGAAAAATCCACCAAAGAAAAATTTCTCTCGCACTAACTCAACCGTGACTCAGAACTCCCTCGGAAACTCGGGTGCTTGTAGTAAAGAAACCCCAAGTAATGGATACAACAAGGGACACAGCTTTGAAACATGCGGGACGTTTGAGTCACTGTTTGGGTTGGAGTCTTTGGAATCTTCAAATTCTGAGTTTTCCCAATCTCTGTCTCCTGACCCTGAGCCTAGTACTAGTCTTTTCCAAGATGAAAGCAAGCCGGAGATTGGTGCAGAATTGCCATTTTCTTTTCTTGAGAAATGGCTTCTAGATGAAGTTGCTTTGCCAGGAATAATGAATTAG 960 0.4646 MGRPPCCDREGVKKGPWTPEEDILLVSYIQQHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGSFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNHWNTHLKKKLKKMQTGVEGESMRDAFSASHTMPRGQWERRLQNDIKMAKRALREALSPPKPSGSFQSNTSNTTGSFSTSAKPAQSLCYASTADNIARLLKEWKKNPPKKNFSRTNSTVTQNSLGNSGACSKETPSNGYNKGHSFETCGTFESLFGLESLESSNSEFSQSLSPDPEPSTSLFQDESKPEIGAELPFSFLEKWLLDEVALPGIMN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1096 319 Gene3D - 68 132 - -
Lele13g1096 319 Gene3D - 13 66 - -
Lele13g1096 319 MobiDBLite consensus disorder prediction 210 239 - -
Lele13g1096 319 MobiDBLite consensus disorder prediction 161 185 - -
Lele13g1096 319 FunFam MYB-related transcription factor 13 66 - -
Lele13g1096 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele13g1096 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele13g1096 319 FunFam Transcription factor MYB30 68 126 - -
Lele13g1096 319 MobiDBLite consensus disorder prediction 270 290 - -
Lele13g1096 319 SMART sant 66 114 IPR001005 -
Lele13g1096 319 SMART sant 13 63 IPR001005 -
Lele13g1096 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele13g1096 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele13g1096 319 MobiDBLite consensus disorder prediction 215 239 - -
Lele13g1096 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele13g1096 319 MobiDBLite consensus disorder prediction 270 291 - -
Lele13g1096 319 MobiDBLite consensus disorder prediction 166 185 - -
Lele13g1096 319 CDD SANT 16 61 IPR001005 -
Lele13g1096 319 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele13g1096 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele13g1096 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Lele13g1096 319 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1096 Lele-ChrLele13 21770049 21771214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1096 1 311 MYB Transcription Factor Family AT5G62470 49.025 8.60e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele13g1096 Myb_DNA-binding 4.3e-16 CL0123