Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1093 ATGGACTTAACCCCCTCTATCGCGAACAGCCCCACCGCCACCAATACTCCTACTAGTACAAAATCCCCAGAACATGACAGTGAAACACCGACCCGGATCCCGACCGCCGCTAAGCCCTTGTCCTTCTCCAACGGCGTCCTCAAGCGCCACCATCACCCCCGACTCCCCAGCCATCAACTGCCCGTCACATACAAGGAATGCCTGAAAAACCATGCAGCCAGCTTAGGAGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGGCCTCTCCCACCGCCAACAACGCCGACCCCAGCTCCATCAAATGCGCCGCCTGTGGCTGCCACCGCAATTTCCACCGCCGTGAGCCCGAAGAGCCCATATCCACAAACCACGTCATCGAGTATCAGTCTCACCATCGACACCATCCCCCGCCGCCTCCGCCTTTTCAGGTTTCCAATCGAAGCCCCAATTCGGCGTCGCCACCTCCGATCTCCTCTTCGTACTACCCGTCCGCACCCCATATGCTTCTGGCTCTCTCTGCGGCCGGGATACAAGCTCCTCCGGAGAGCGCGGCTGCTCCTGCAAGCGCGCTGGCAACGCCGAGCCCGAATGCACGGAAGCGGTTCAGGACCAAGTTCACCCAGGATCAGAAGGAGAAGATGTACCATTTGGCGGAGAGGGTGGGGTGGAAGATGCAGAAGAGGGACGAAGAATTGATTCATGAGTTCTGCAATGAGGTTGGGGTTGACAGGGGAGTGTTCAAGGTTTGGATGCACAACAACAAGAACAACTTCGGCAAGAGAGATGCTGCTAATAATCATGATGGTAGGAACACTCTAGATCAAGACCCTCGCGCCCTCCCCGCTGAAATCCACGCCAACAACGACAACGGAAGCGCGCAGGATCCGAATCACCTCCTCTACACCAACGATAGTATTGGAGCAAACCTTGGTACTAATGGGTCCTCTTCGTCCTCTTGA 960 0.5708 MDLTPSIANSPTATNTPTSTKSPEHDSETPTRIPTAAKPLSFSNGVLKRHHHPRLPSHQLPVTYKECLKNHAASLGGHALDGCGEFMASPTANNADPSSIKCAACGCHRNFHRREPEEPISTNHVIEYQSHHRHHPPPPPPFQVSNRSPNSASPPPISSSYYPSAPHMLLALSAAGIQAPPESAAAPASALATPSPNARKRFRTKFTQDQKEKMYHLAERVGWKMQKRDEELIHEFCNEVGVDRGVFKVWMHNNKNNFGKRDAANNHDGRNTLDQDPRALPAEIHANNDNGSAQDPNHLLYTNDSIGANLGTNGSSSSS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1093 319 MobiDBLite consensus disorder prediction 287 319 - -
Lele13g1093 319 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Lele13g1093 319 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Lele13g1093 319 SUPERFAMILY Homeodomain-like 193 260 IPR009057 -
Lele13g1093 319 MobiDBLite consensus disorder prediction 128 159 - -
Lele13g1093 319 FunFam Zinc-finger homeodomain protein 2 187 260 - -
Lele13g1093 319 Gene3D - 188 259 - -
Lele13g1093 319 MobiDBLite consensus disorder prediction 1 24 - -
Lele13g1093 319 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Lele13g1093 319 MobiDBLite consensus disorder prediction 257 319 - -
Lele13g1093 319 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 257 - -
Lele13g1093 319 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 115 IPR006456 -
Lele13g1093 319 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1093 Lele-ChrLele13 21750992 21751951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1093 12 255 ZF-HD Transcription Factor Family AT5G15210 52.209 1.40e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele13g1093 ZF-HD_dimer 2.4e-28 No_clan