Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1089 ATGCAGGCGACAAGTCAAAATATGTGGAGCTTGAATCCTGAAGGAGAGCAGCCGCACAACCCAAGCACCCATAAACCTCCTGTTCCTCTTCCCTTTGCAAAACTTGCAGAGAATTACCCTCCTGGTTTTCTCAGAAAGGTATTGGCAGAGATAATAGGAACATATCTGTTGGTGTTTGTGGGAAGTGGGACGGCTGCTCTGAATGCTTATGATGAGCAGAAAATATCAAAACTAGGAGCTTCACTTGCAGGAGGATTCATTGTGATTGTGATGATTTATGCTATCGGACACATCTCTGGTGCTCACATGAACCCAGCAGTGTCCTTTACTTTTGCCGCTGTCGGGCATTTTCCATGGAAACAGGTCCCATTATACGTGGCAACCCAATTGAAAGGAGCCATTTCTGCCTCTTTTACTTTGCGGCTGATACTGAACCCAATAAGACAGCTTGGGACAACCTCACCTTCTGGAAGTGATGTTCAAGCTCTCATCATGGAGATGGTGGCAACGTTCACTATGATGTTCATTGCCTCCGCCGTGTCAACTGATGCAAAAGCCCTTGGAGAGCTCGCAGGAGTTGCAGTAGGCTCTTCAGTAATCATAGCAGGCATCCTTGCAGGACCTATATCAGGGGGATCAATGAACCCAGCAAGAACACTTGGTCCAGCGATAGCAAGTGGATCCTATAAAGGACTTTGGGTCTATGTGGTGGGACCAATTACCGGGGCAATTTTGGGAGCATGGTCTTACATTACTATTAAAGAGACAGATGACTCATCTTCGTCCACTTCACTGCTATCATTTCCACTCGAGCTTAGCTCAAAGAATAGGGAAACTGAGCAAGTTTAA 849 0.4629 MQATSQNMWSLNPEGEQPHNPSTHKPPVPLPFAKLAENYPPGFLRKVLAEIIGTYLLVFVGSGTAALNAYDEQKISKLGASLAGGFIVIVMIYAIGHISGAHMNPAVSFTFAAVGHFPWKQVPLYVATQLKGAISASFTLRLILNPIRQLGTTSPSGSDVQALIMEMVATFTMMFIASAVSTDAKALGELAGVAVGSSVIIAGILAGPISGGSMNPARTLGPAIASGSYKGLWVYVVGPITGAILGAWSYITIKETDDSSSSTSLLSFPLELSSKNRETEQV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1089 282 MobiDBLite consensus disorder prediction 1 19 - -
Lele13g1089 282 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lele13g1089 282 Gene3D Glycerol uptake facilitator protein. 27 263 IPR023271 -
Lele13g1089 282 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1089 282 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1089 282 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1089 282 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1089 282 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1089 282 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1089 282 SUPERFAMILY Aquaporin-like 38 256 IPR023271 -
Lele13g1089 282 MobiDBLite consensus disorder prediction 1 27 - -
Lele13g1089 282 Pfam Major intrinsic protein 43 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1089 282 CDD MIP 45 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1089 282 PANTHER AQUAPORIN NIP2-1 25 259 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1089 Lele-ChrLele13 21708465 21711881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1089 45 258 Major Intrinsic Protein MIP AT5G37820 51.389 1.65e-71 221