Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1088 ATGCATACCAATGCCTATGCCTCTGAGACCAATAGCTACGGATGTGACATCCCACGTGCTCTATCTTCTAAGTCCAGTAACTGCGTTTGGCGATCGAACTTGAATAGTGAAACAGATCAAGATCAGGCTCAAGGCCCTGGTGCCCAGGAGCAACATGCTGGTCATTCCATCTCAAAACTTGCAGAGAATTACCCTCCCGGCTTTCTCAGGAAGGCATTAGCAGAGACGATAGGGACATATCTATTGGTTTTTGTGATAAGTGGGACGGCTGCACTGAGTGCTTCCGATGAGAAGAAAGTAGCAGGAATAGGAGCTGAACTTGCAGCAGGATTCATTGTGATGGTGATGGTCTATGCCATCGGACACATCTCAGGGGCCCACATAAACCCAGCCGTCTCCATAGCTTTCGCGGCTTTGGGCCATTTTCCATGGAAAGAGGTCCCGTTTTACGTGGGAGGTCAAATGACAGGAAGCATTGCAGCGTCTTTTACGCTACGACTGTTATTACATCCTATAAAGAATCTGGGAACAAACTCTCCTTCTGGAACAGATGCTCAAGCTCTAGTCATGGAGATCCTCATCACTTTCATTCTCATGTTCGTTATCTGCGCCGTCACAACTGATTCAAAAGCTGTTGGACAGCTGGCGGGAGTTGCAATAGGCTTTTCAGTGGGCATAGGAAACATCATTGGAGGACCGATATCAGGGGGATCGTTGAATCCGGCAAGAACATTAGGTCCTGCATTTGCAAGTGGGTCCTATAAAGGAATTTGGGTGTATCTGGTTGGACCAGTTATTGGGGCCGTTTTAGGTGCATGGTCTTACAGTACTATTCAGGAGAATGAAGATAATTCAGCATCCTCCATTAAACTAACTTCATGCCTATCCAAGCTACGCTCCATGAATAAGGAAGCTAAGCAAGTTGGCGTGGAACACGATCATGCCAACAGAGTTTAA 957 0.4692 MHTNAYASETNSYGCDIPRALSSKSSNCVWRSNLNSETDQDQAQGPGAQEQHAGHSISKLAENYPPGFLRKALAETIGTYLLVFVISGTAALSASDEKKVAGIGAELAAGFIVMVMVYAIGHISGAHINPAVSIAFAALGHFPWKEVPFYVGGQMTGSIAASFTLRLLLHPIKNLGTNSPSGTDAQALVMEILITFILMFVICAVTTDSKAVGQLAGVAIGFSVGIGNIIGGPISGGSLNPARTLGPAFASGSYKGIWVYLVGPVIGAVLGAWSYSTIQENEDNSASSIKLTSCLSKLRSMNKEAKQVGVEHDHANRV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1088 318 Pfam Major intrinsic protein 68 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 PANTHER AQUAPORIN NIP2-1 49 283 IPR034294 -
Lele13g1088 318 SUPERFAMILY Aquaporin-like 63 280 IPR023271 -
Lele13g1088 318 Gene3D Glycerol uptake facilitator protein. 28 288 IPR023271 -
Lele13g1088 318 CDD MIP 70 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 PRINTS Major intrinsic protein family signature 221 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 PRINTS Major intrinsic protein family signature 190 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 PRINTS Major intrinsic protein family signature 109 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 PRINTS Major intrinsic protein family signature 70 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 PRINTS Major intrinsic protein family signature 146 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 TIGRFAM MIP: MIP family channel proteins 74 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele13g1088 318 ProSitePatterns MIP family signature. 127 135 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1088 Lele-ChrLele13 21706027 21707500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1088 70 304 Major Intrinsic Protein MIP AT5G37820 45.992 8.04e-68 213