Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1084 ATGTCTTCAGAACCCAGCTCGTCGGAATCATCGTCTTCCCCAGCCGCCGACGAATTGGACGACTTCCAAATTCGAAGGCCCACTCTGCTTCTTCCTTTCGTTTTCAGGCTCGCTGCTCGCCAACGTCACCGTCCCCGCCATAACGACGATTCCGTCCTCGATCTTCCCTTGCGGGTCATCCTCTTTAACCCTGCCACCAGAACCACCGTCATGATCGACCGCTCCCTCAACTTGGACTCGCTACGCGAGGAGGTGCCCACGACGAAGCCCGGGTTGTTGCCCGCGTCCAAGGATTCCATGGCGGCCATGCCTACCGTCGTGGTCACCGAAAAAGGTTCTGAGTGTGCGATTTGCTTGGAAGATTACGTGATTGGGGACGATGCTAGGGAAATGCCCTGCAAGCATAGGTTTCACCCTCGCTGCATCGAGAAGTGGCTGGGGATTCATGGCGTGTGTCCTGTTTGCCGATTCCCGATGCCCGTGGACGATCCGGACGTCGAGCTTGACGGTAGCGAAACGACGGAGAGCGATGGTGACCACATGCATGCGGGTTCCGACTCTTCCCGGAGCTCCTCTCATTCTGATACTGCTTCTGATTCACAAGACGAGAGTTCTACAGCGGATGAATCCTCGACTAGTCCAGAGTCTGTAAGCGTGGAATAA 663 0.5626 MSSEPSSSESSSSPAADELDDFQIRRPTLLLPFVFRLAARQRHRPRHNDDSVLDLPLRVILFNPATRTTVMIDRSLNLDSLREEVPTTKPGLLPASKDSMAAMPTVVVTEKGSECAICLEDYVIGDDAREMPCKHRFHPRCIEKWLGIHGVCPVCRFPMPVDDPDVELDGSETTESDGDHMHAGSDSSRSSSHSDTASDSQDESSTADESSTSPESVSVE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1084 220 MobiDBLite consensus disorder prediction 166 220 - -
Lele13g1084 220 Pfam Ring finger domain 114 156 IPR001841 -
Lele13g1084 220 FunFam E3 ubiquitin-protein ligase RNF181 83 162 - -
Lele13g1084 220 SMART ring_2 115 155 IPR001841 -
Lele13g1084 220 CDD RING-H2_PA-TM-RING 114 156 - -
Lele13g1084 220 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Lele13g1084 220 SUPERFAMILY RING/U-box 110 162 - -
Lele13g1084 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 162 IPR013083 -
Lele13g1084 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 32 160 - -
Lele13g1084 220 MobiDBLite consensus disorder prediction 187 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1084 Lele-ChrLele13 21682669 21683331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1084 25 166 C3H Transcription Factor Family AT1G26800 42.657 2.86e-34 119