Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1062 ATGGCAAGGAAGAGGAAGGCTGCGGAAATGGAGGAAGAGAGAAGCATGAAATGGGATGAGATGGTGAAGGAAGCTGAAGCACTTGGAGTGAGCAGAAGAGCCAGCATGCTTTTTGTCGGGGTCAGACAAAGGCCTTCGGGAAGATGGGTTGCAGAGATCAATGATACTATTCAGAAGATTAGGGTTTGGTTGGGAACTTTTGATACTGCAGAGGAAGCTGCTCGTGCTTATGATGAGGCTGCTTGTCTCCTACGTGGTGCCAACACGAGGACCAATTTCTGGCCTTGTTCTTATTCTTCTTCAACCCCTGTTATTTCCTCTAAGATCACCAATATCCTCCTTCAAAGGCTCAAAGCGAGGAACAACTCTTGCTCTGATTCTTCTTCTTCCTCTGTTTCTCTTCTCTCTGATCAGCACAATGATGATGAAGAAGAAGAAGCTGCGGATTTTTCTATGGACCAGTTGACTGATTTCCTTAACGACCCTGAAGACTACAACAGCGCAGGCAACAAGGAGTTCAATATGTTCACGGATCATAGTGCGCAAGTTGATTCCTTTACCAGTAGTCTTGAATCATGTTTGACTGAAACAGATGCGTGCAGAGAAAGAGAAATGGGGTCTGAAAATGACGTCATAAATATTGCTGAGTGCAATTCAGGTGGGGAAAGAGAGGAAGAAAGTGAAGAAGAAACGACGACTCAGATGAGTGTTGAGGATTTTGAGTTTCTGGACAAGGTTGCTCCATCATGTTACTATTCACCATTTGAGATGGCTGAAGAGATGGAGGAGCCTGTGGCGGAGGCAGAGAGCTAG 813 0.4551 MARKRKAAEMEEERSMKWDEMVKEAEALGVSRRASMLFVGVRQRPSGRWVAEINDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSYSSSTPVISSKITNILLQRLKARNNSCSDSSSSSVSLLSDQHNDDEEEEAADFSMDQLTDFLNDPEDYNSAGNKEFNMFTDHSAQVDSFTSSLESCLTETDACREREMGSENDVINIAECNSGGEREEESEEETTTQMSVEDFEFLDKVAPSCYYSPFEMAEEMEEPVAEAES 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1062 270 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Lele13g1062 270 SUPERFAMILY DNA-binding domain 38 94 IPR016177 GO:0003677
Lele13g1062 270 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Lele13g1062 270 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Lele13g1062 270 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Lele13g1062 270 MobiDBLite consensus disorder prediction 122 136 - -
Lele13g1062 270 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Lele13g1062 270 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Lele13g1062 270 Gene3D AP2/ERF domain 37 94 IPR036955 GO:0003700|GO:0006355
Lele13g1062 270 CDD AP2 38 93 IPR001471 GO:0003700|GO:0006355
Lele13g1062 270 MobiDBLite consensus disorder prediction 122 148 - -
Lele13g1062 270 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1062 Lele-ChrLele13 21551601 21552413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1062 38 113 AP2-EREBP Transcription Factor Family AT5G19790 72.368 2.99e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g1062 AP2 4.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1062 13 21551601 21552413 Lele15g1406 15 8169079 8170071 hybridization
Lele13g1062 13 21551601 21552413 Lele16g1434 16 8174558 8175706 hybridization