Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1057 ATGGGAAACTACCGGAGGTTGAGGGTGATGAGCATGGCGATGGCAATGGCGGTGATGTTTCTGATAATGGTGGTGACGGGAGATCCGGTGCTGCACAAGGTGGGTGGATCCAAAGGTTGGATTAATCACGACGTTAACTATACTGAATGGTCTGCTCACGAGCAATTCTTTCCCAGTGATTGGCTCCTATTCAGCTTTGACAAGCGATACTTCAACGTTCTGGAGGTGAATGAGACAAGCTACGAGAATTGCAGAGACGATGGGTTCGTGAAGAACTTGACGCGTGGTGGGAGAGACGTGGTGCAATTGACAGAGGCAAGGACTTACTACTACCTCACTAGCGGAGGCTATTGCTTTCAAGGTATGAAAGTCGCCGTCACCGTCCAACGGGACCACCGTGAAGCAGCTCCTGCTCCGTCTCCCTCTCACTCTTCGGCACCTTCTGCTTTCTCTATGTTCAATGCGCTTCATTGCCTCGCTCCTTTCATGGCTTTTTGGGGCATTATTAATATATGA 516 0.5 MGNYRRLRVMSMAMAMAVMFLIMVVTGDPVLHKVGGSKGWINHDVNYTEWSAHEQFFPSDWLLFSFDKRYFNVLEVNETSYENCRDDGFVKNLTRGGRDVVQLTEARTYYYLTSGGYCFQGMKVAVTVQRDHREAAPAPSPSHSSAPSAFSMFNALHCLAPFMAFWGIINI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1057 171 Pfam Plastocyanin-like domain 42 122 IPR003245 GO:0009055
Lele13g1057 171 ProSiteProfiles Phytocyanin domain profile. 30 130 IPR003245 GO:0009055
Lele13g1057 171 SUPERFAMILY Cupredoxins 31 129 IPR008972 -
Lele13g1057 171 FunFam Lamin-like protein 28 131 - -
Lele13g1057 171 Gene3D - 30 133 IPR008972 -
Lele13g1057 171 PANTHER BLUE COPPER PROTEIN 23 138 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1057 Lele-ChrLele13 21518223 21519885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1057 16 151 Phytocyanin Superfamily AT2G27035 44.853 2.28e-40 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1057 13 21518223 21519885 Lele15g1410 15 8206213 8209030 hybridization
Lele13g1057 13 21518223 21519885 Lele16g1439 16 8200873 8202711 hybridization